miR-218在宫颈癌组织中的表达及预测靶基因的生物信息学分析

Xiaoxiao Hu, Kang-kang Zeng, X. Mo, Fei Liu, Wenjing Zheng
{"title":"miR-218在宫颈癌组织中的表达及预测靶基因的生物信息学分析","authors":"Xiaoxiao Hu, Kang-kang Zeng, X. Mo, Fei Liu, Wenjing Zheng","doi":"10.3760/CMA.J.ISSN.1006-9801.2014.07.002","DOIUrl":null,"url":null,"abstract":"Objective To investigate the expression of microRNA( miRNA) in cervical cancer tissues and its predicted target genes to provide a theoretical basis for the study on the regulatory mechanism and biological functions of miR-9. Methods MiRNA microarray was applied to detecting the miRNAs expressions in cervical caner tissues and normal cercvical tissues. The biological software was used to predict target genes of up-regulate miRNA-9. The miR-9mimics were transected into cervical cancer cell line Hela,and the mRNA microarrays was used to examine the expression of downstream genes of miR-9. The bioinformatics analysis of the target genes of miR-9 involved gene ontology and signal transduction pathway enrichment. Results Compared with normal cervical tissues,there were 15 miRNAs up-expression and10 miRNAs down-expression in cervical cancer tissues. miR-21 and miR-9 was significantly up-regulated while miR-376a and miR-218 were significantly down-regulated. The mRNA microarrays showed that 148 genes were down expression in miR-9,which also existed in network database,and the genes set mainly located in biosynthetic and metabolic process as well as transcription and protein binding function. The KEGG pathway analysis demonstrated that the gene set mostly located in the regulation of actin cytoskeleton,sphingolipid metabolism and focal adhesion. Conclusion miR-9 expression significantly increases in cervical cancer tissues. The target genes set of miR-9 enriches in multiple biological function and process as well as tumor-related signaling pathways.","PeriodicalId":12855,"journal":{"name":"广西医学","volume":"46 1","pages":"437-441"},"PeriodicalIF":0.0000,"publicationDate":"2014-07-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Expression of miR-218 in cervical cancer tissues and bioinformatics analysis of predicted target genes\",\"authors\":\"Xiaoxiao Hu, Kang-kang Zeng, X. Mo, Fei Liu, Wenjing Zheng\",\"doi\":\"10.3760/CMA.J.ISSN.1006-9801.2014.07.002\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Objective To investigate the expression of microRNA( miRNA) in cervical cancer tissues and its predicted target genes to provide a theoretical basis for the study on the regulatory mechanism and biological functions of miR-9. Methods MiRNA microarray was applied to detecting the miRNAs expressions in cervical caner tissues and normal cercvical tissues. The biological software was used to predict target genes of up-regulate miRNA-9. The miR-9mimics were transected into cervical cancer cell line Hela,and the mRNA microarrays was used to examine the expression of downstream genes of miR-9. The bioinformatics analysis of the target genes of miR-9 involved gene ontology and signal transduction pathway enrichment. Results Compared with normal cervical tissues,there were 15 miRNAs up-expression and10 miRNAs down-expression in cervical cancer tissues. miR-21 and miR-9 was significantly up-regulated while miR-376a and miR-218 were significantly down-regulated. The mRNA microarrays showed that 148 genes were down expression in miR-9,which also existed in network database,and the genes set mainly located in biosynthetic and metabolic process as well as transcription and protein binding function. The KEGG pathway analysis demonstrated that the gene set mostly located in the regulation of actin cytoskeleton,sphingolipid metabolism and focal adhesion. Conclusion miR-9 expression significantly increases in cervical cancer tissues. The target genes set of miR-9 enriches in multiple biological function and process as well as tumor-related signaling pathways.\",\"PeriodicalId\":12855,\"journal\":{\"name\":\"广西医学\",\"volume\":\"46 1\",\"pages\":\"437-441\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2014-07-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"广西医学\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.3760/CMA.J.ISSN.1006-9801.2014.07.002\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"广西医学","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.3760/CMA.J.ISSN.1006-9801.2014.07.002","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

目的探讨microRNA(miRNA)在宫颈癌组织中的表达及其预测靶基因,为研究miR-9的调控机制和生物学功能提供理论依据。方法应用MiRNA芯片检测宫颈癌组织和正常宫颈组织中MiRNA的表达。利用生物软件预测miRNA-9上调的靶基因。将miR-9模拟物横切到宫颈癌细胞系Hela中,利用mRNA微阵列检测miR-9下游基因的表达。miR-9靶基因的生物信息学分析涉及基因本体和信号转导通路富集。结果与正常宫颈组织比较,宫颈癌组织中mirna表达上调15个,下调10个。miR-21和miR-9显著上调,miR-376a和miR-218显著下调。mRNA微阵列显示,miR-9中有148个基因下调表达,这些基因在网络数据库中也存在,这些基因集主要位于生物合成和代谢过程以及转录和蛋白质结合功能。KEGG通路分析表明,该基因集主要位于肌动蛋白细胞骨架、鞘脂代谢和局灶黏附的调控中。结论miR-9在宫颈癌组织中的表达明显升高。miR-9的靶基因集丰富了多种生物学功能和过程以及肿瘤相关的信号通路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Expression of miR-218 in cervical cancer tissues and bioinformatics analysis of predicted target genes
Objective To investigate the expression of microRNA( miRNA) in cervical cancer tissues and its predicted target genes to provide a theoretical basis for the study on the regulatory mechanism and biological functions of miR-9. Methods MiRNA microarray was applied to detecting the miRNAs expressions in cervical caner tissues and normal cercvical tissues. The biological software was used to predict target genes of up-regulate miRNA-9. The miR-9mimics were transected into cervical cancer cell line Hela,and the mRNA microarrays was used to examine the expression of downstream genes of miR-9. The bioinformatics analysis of the target genes of miR-9 involved gene ontology and signal transduction pathway enrichment. Results Compared with normal cervical tissues,there were 15 miRNAs up-expression and10 miRNAs down-expression in cervical cancer tissues. miR-21 and miR-9 was significantly up-regulated while miR-376a and miR-218 were significantly down-regulated. The mRNA microarrays showed that 148 genes were down expression in miR-9,which also existed in network database,and the genes set mainly located in biosynthetic and metabolic process as well as transcription and protein binding function. The KEGG pathway analysis demonstrated that the gene set mostly located in the regulation of actin cytoskeleton,sphingolipid metabolism and focal adhesion. Conclusion miR-9 expression significantly increases in cervical cancer tissues. The target genes set of miR-9 enriches in multiple biological function and process as well as tumor-related signaling pathways.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
30953
期刊介绍: Guangxi Medicine (CN45-1122/R, ISSN 0253-4304) is a comprehensive medical academic journal under the supervision of the Guangxi Zhuang Autonomous Region Health Commission, sponsored by the Guangxi Zhuang Autonomous Region Institute of Medical Science and Information, and publicly issued at home and abroad. In the 50 years since its founding, Guangxi Medicine has been an important reference for the autonomous region’s people’s government and the autonomous region’s health commission to make medical and health decisions and management. It is an important think tank for health managers, scientific researchers, and clinical workers, and an important platform for technological innovation and achievement collection. At present, Guangxi Medicine has been included in the list of “China’s Core Science and Technology Journals” of the China Institute of Scientific and Technical Information for 15 consecutive years, and has been selected for the Q1 zone of the “Annual Report on the Impact Factor of Chinese Academic Journals (Natural Science and Engineering Technology Edition)” for 5 consecutive years. The total number of citations has reached one million times, and the impact factor ranks among the top comprehensive medical academic journals of the same type. It has been rated as an “Excellent Science and Technology Journal” and “Top Ten Science and Technology Journals” by government departments many times.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信