{"title":"miR-218在宫颈癌组织中的表达及预测靶基因的生物信息学分析","authors":"Xiaoxiao Hu, Kang-kang Zeng, X. Mo, Fei Liu, Wenjing Zheng","doi":"10.3760/CMA.J.ISSN.1006-9801.2014.07.002","DOIUrl":null,"url":null,"abstract":"Objective To investigate the expression of microRNA( miRNA) in cervical cancer tissues and its predicted target genes to provide a theoretical basis for the study on the regulatory mechanism and biological functions of miR-9. Methods MiRNA microarray was applied to detecting the miRNAs expressions in cervical caner tissues and normal cercvical tissues. The biological software was used to predict target genes of up-regulate miRNA-9. The miR-9mimics were transected into cervical cancer cell line Hela,and the mRNA microarrays was used to examine the expression of downstream genes of miR-9. The bioinformatics analysis of the target genes of miR-9 involved gene ontology and signal transduction pathway enrichment. Results Compared with normal cervical tissues,there were 15 miRNAs up-expression and10 miRNAs down-expression in cervical cancer tissues. miR-21 and miR-9 was significantly up-regulated while miR-376a and miR-218 were significantly down-regulated. The mRNA microarrays showed that 148 genes were down expression in miR-9,which also existed in network database,and the genes set mainly located in biosynthetic and metabolic process as well as transcription and protein binding function. The KEGG pathway analysis demonstrated that the gene set mostly located in the regulation of actin cytoskeleton,sphingolipid metabolism and focal adhesion. Conclusion miR-9 expression significantly increases in cervical cancer tissues. The target genes set of miR-9 enriches in multiple biological function and process as well as tumor-related signaling pathways.","PeriodicalId":12855,"journal":{"name":"广西医学","volume":"46 1","pages":"437-441"},"PeriodicalIF":0.0000,"publicationDate":"2014-07-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Expression of miR-218 in cervical cancer tissues and bioinformatics analysis of predicted target genes\",\"authors\":\"Xiaoxiao Hu, Kang-kang Zeng, X. Mo, Fei Liu, Wenjing Zheng\",\"doi\":\"10.3760/CMA.J.ISSN.1006-9801.2014.07.002\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Objective To investigate the expression of microRNA( miRNA) in cervical cancer tissues and its predicted target genes to provide a theoretical basis for the study on the regulatory mechanism and biological functions of miR-9. Methods MiRNA microarray was applied to detecting the miRNAs expressions in cervical caner tissues and normal cercvical tissues. The biological software was used to predict target genes of up-regulate miRNA-9. The miR-9mimics were transected into cervical cancer cell line Hela,and the mRNA microarrays was used to examine the expression of downstream genes of miR-9. The bioinformatics analysis of the target genes of miR-9 involved gene ontology and signal transduction pathway enrichment. Results Compared with normal cervical tissues,there were 15 miRNAs up-expression and10 miRNAs down-expression in cervical cancer tissues. miR-21 and miR-9 was significantly up-regulated while miR-376a and miR-218 were significantly down-regulated. The mRNA microarrays showed that 148 genes were down expression in miR-9,which also existed in network database,and the genes set mainly located in biosynthetic and metabolic process as well as transcription and protein binding function. The KEGG pathway analysis demonstrated that the gene set mostly located in the regulation of actin cytoskeleton,sphingolipid metabolism and focal adhesion. Conclusion miR-9 expression significantly increases in cervical cancer tissues. The target genes set of miR-9 enriches in multiple biological function and process as well as tumor-related signaling pathways.\",\"PeriodicalId\":12855,\"journal\":{\"name\":\"广西医学\",\"volume\":\"46 1\",\"pages\":\"437-441\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2014-07-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"广西医学\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.3760/CMA.J.ISSN.1006-9801.2014.07.002\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"广西医学","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.3760/CMA.J.ISSN.1006-9801.2014.07.002","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Expression of miR-218 in cervical cancer tissues and bioinformatics analysis of predicted target genes
Objective To investigate the expression of microRNA( miRNA) in cervical cancer tissues and its predicted target genes to provide a theoretical basis for the study on the regulatory mechanism and biological functions of miR-9. Methods MiRNA microarray was applied to detecting the miRNAs expressions in cervical caner tissues and normal cercvical tissues. The biological software was used to predict target genes of up-regulate miRNA-9. The miR-9mimics were transected into cervical cancer cell line Hela,and the mRNA microarrays was used to examine the expression of downstream genes of miR-9. The bioinformatics analysis of the target genes of miR-9 involved gene ontology and signal transduction pathway enrichment. Results Compared with normal cervical tissues,there were 15 miRNAs up-expression and10 miRNAs down-expression in cervical cancer tissues. miR-21 and miR-9 was significantly up-regulated while miR-376a and miR-218 were significantly down-regulated. The mRNA microarrays showed that 148 genes were down expression in miR-9,which also existed in network database,and the genes set mainly located in biosynthetic and metabolic process as well as transcription and protein binding function. The KEGG pathway analysis demonstrated that the gene set mostly located in the regulation of actin cytoskeleton,sphingolipid metabolism and focal adhesion. Conclusion miR-9 expression significantly increases in cervical cancer tissues. The target genes set of miR-9 enriches in multiple biological function and process as well as tumor-related signaling pathways.
期刊介绍:
Guangxi Medicine (CN45-1122/R, ISSN 0253-4304) is a comprehensive medical academic journal under the supervision of the Guangxi Zhuang Autonomous Region Health Commission, sponsored by the Guangxi Zhuang Autonomous Region Institute of Medical Science and Information, and publicly issued at home and abroad. In the 50 years since its founding, Guangxi Medicine has been an important reference for the autonomous region’s people’s government and the autonomous region’s health commission to make medical and health decisions and management. It is an important think tank for health managers, scientific researchers, and clinical workers, and an important platform for technological innovation and achievement collection. At present, Guangxi Medicine has been included in the list of “China’s Core Science and Technology Journals” of the China Institute of Scientific and Technical Information for 15 consecutive years, and has been selected for the Q1 zone of the “Annual Report on the Impact Factor of Chinese Academic Journals (Natural Science and Engineering Technology Edition)” for 5 consecutive years. The total number of citations has reached one million times, and the impact factor ranks among the top comprehensive medical academic journals of the same type. It has been rated as an “Excellent Science and Technology Journal” and “Top Ten Science and Technology Journals” by government departments many times.