鹿科韩国鹿科(Cervus elaphus hanglu)的系统发育地位及其分类关系的研究

IF 1.1 4区 生物学 Q4 GENETICS & HEREDITY
V. Kumar, Mukesh Thakur, Ankita Rajpoot, B. D. Joshi, P. Nigam, K. Ahmad, Dhyanendra Kumar, S. Goyal
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引用次数: 9

摘要

鹿(Cervus elaphus hanglu)是印度次大陆马鹿群中唯一幸存的“最不受关注”的鹿种。由于公共数据库中没有序列数据,因此尚不清楚韩国人与鹿科其他成员的系统发育状况。因此,本研究基于细胞色素b基因序列数据(约421 bp),确定了汉鹿与其他马鹿亚种的系统发育状况,并划定了遗传边界。马鹿在系统发育树上有三个主要的单系群,即西部(Hap-01 ~ Hap-10)、东部(Hap-11 ~ Hap-20)和塔里木(Hap-21 ~ Hap-25)群。总单倍型多样性和单位点核苷酸多样性分别为0.9771(±0.0523)和0.0388(±0.00261)。在系统发育树中,汉族人与塔里木族(Yarkand and Bactrian Red Deer)聚集在一起,具有很强的自举支持(92%),并且在遗传上更接近于Bactrian Red Deer而不是Yarkand Red Deer。我们的分子分析支持了韩国人从大夏马鹿(Bactrian Red Deer)分化出来,并在大约1.2 MYA从塔吉克斯坦迁移到印度的观点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Resolving the phylogenetic status and taxonomic relationships of the Hangul (Cervus elaphus hanglu) in the family Cervidae
Abstract The Hangul (Cervus elaphus hanglu) is a “Least Concern” deer species, and it is the only survivor of the Red Deer group in the Indian subcontinent. The phylogenetic status of the Hangul relative to the other members of the family Cervidae is not known because sequence data are not available in public databases. Therefore, this study was carried out to determine the phylogenetic status and delineate the genetic boundaries of the Hangul with respect to the other Red Deer subspecies on the basis of cytochrome b gene sequence data (ca 421 bp). There are three major monophyletic groups of the Red Deer in the phylogenetic tree, which are referred to as the western (Hap-01 to Hap-10), eastern (Hap-11 to Hap-20) and tarim (Hap-21 to Hap-25) groups. The overall haplotype diversity and per-site nucleotide diversity were 0.9771 (±0.0523) and 0.0388 (±0.00261), respectively. In the phylogenetic tree, the Hangul clustered with the tarim group (Yarkand and Bactrian Red Deer) with a strong bootstrap support (92%) and was found to be genetically closer to the Bactrian Red Deer than to the Yarkand Red Deer. Our molecular analysis supported the idea that the Hangul diverged from the Bactrian Red Deer and migrated to India from Tajikistan approximately 1.2 MYA.
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来源期刊
Mitochondrial Dna Part a
Mitochondrial Dna Part a Biochemistry, Genetics and Molecular Biology-Genetics
CiteScore
3.00
自引率
0.00%
发文量
6
期刊介绍: Mitochondrial DNA Part A publishes original high-quality manuscripts on physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism, and/or interactions. Manuscripts on cytosolic and extracellular mtDNA, and on dysfunction caused by alterations in mtDNA integrity as well as methodological papers detailing novel approaches for mtDNA manipulation in vitro and in vivo are welcome. Descriptive papers on DNA sequences from mitochondrial genomes, and also analytical papers in the areas of population genetics, phylogenetics and human evolution that use mitochondrial DNA as a source of evidence for studies will be considered for publication. The Journal also considers manuscripts that examine population genetic and systematic theory that specifically address the use of mitochondrial DNA sequences, as well as papers that discuss the utility of mitochondrial DNA information in medical studies and in human evolutionary biology.
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