来自肠贾第虫的超氧化物还原酶:来自真核生物的第一个SOR的结构特征显示铁中心对光还原高度敏感。

IF 2.2 4区 生物学
C. M. Sousa, P. Carpentier, P. Matias, F. Testa, F. Pinho, P. Sarti, A. Giuffrè, Tiago M. Bandeiras, C. Romão
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引用次数: 7

摘要

超氧化物还原酶(SOR)通常存在于原核生物中,通过将超氧化物阴离子还原为过氧化氢来保护机体免受氧化应激。该反应是在铁中心催化的,铁中心在迄今为止结构表征的原核分子中是高度保守的。本文报道了真核生物原生寄生虫肠贾第虫(Giardia ininalis, GiSOR)中第一个SOR的结构,其分辨率为2.0 Å。利用同步x射线辐射,从同一个闪冷蛋白质晶体收集100 K时的几个衍射数据集,观察到铁中心的光还原。利用在线紫外可见显微分光光度计监测还原,跟踪谷氨酸结合氧化态铁位点的647 nm吸收带的衰减。与迄今为止表征的其他1fe - sor结构相似,该酶具有四聚体四元结构排列。作为一个独特的特征,蛋白的n端环,包含特征性的EKHxP基序,无论铁氧化还原状态如何,都显示出异常高的柔韧性。与先前通过x射线晶体学和傅立叶变换红外光谱收集的证据不同,铁还原没有导致谷氨酸与催化金属的解离或其他结构变化;然而,谷氨酸配体经历了x射线诱导的化学变化,揭示了GiSOR活性部位对x射线辐射损伤的高度敏感性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Superoxide reductase from Giardia intestinalis: structural characterization of the first SOR from a eukaryotic organism shows an iron centre that is highly sensitive to photoreduction.
Superoxide reductase (SOR), which is commonly found in prokaryotic organisms, affords protection from oxidative stress by reducing the superoxide anion to hydrogen peroxide. The reaction is catalyzed at the iron centre, which is highly conserved among the prokaryotic SORs structurally characterized to date. Reported here is the first structure of an SOR from a eukaryotic organism, the protozoan parasite Giardia intestinalis (GiSOR), which was solved at 2.0 Å resolution. By collecting several diffraction data sets at 100 K from the same flash-cooled protein crystal using synchrotron X-ray radiation, photoreduction of the iron centre was observed. Reduction was monitored using an online UV-visible microspectrophotometer, following the decay of the 647 nm absorption band characteristic of the iron site in the glutamate-bound, oxidized state. Similarly to other 1Fe-SORs structurally characterized to date, the enzyme displays a tetrameric quaternary-structure arrangement. As a distinctive feature, the N-terminal loop of the protein, containing the characteristic EKHxP motif, revealed an unusually high flexibility regardless of the iron redox state. At variance with previous evidence collected by X-ray crystallography and Fourier transform infrared spectroscopy of prokaryotic SORs, iron reduction did not lead to dissociation of glutamate from the catalytic metal or other structural changes; however, the glutamate ligand underwent X-ray-induced chemical changes, revealing high sensitivity of the GiSOR active site to X-ray radiation damage.
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来源期刊
自引率
13.60%
发文量
0
审稿时长
3 months
期刊介绍: Acta Crystallographica Section D welcomes the submission of articles covering any aspect of structural biology, with a particular emphasis on the structures of biological macromolecules or the methods used to determine them. Reports on new structures of biological importance may address the smallest macromolecules to the largest complex molecular machines. These structures may have been determined using any structural biology technique including crystallography, NMR, cryoEM and/or other techniques. The key criterion is that such articles must present significant new insights into biological, chemical or medical sciences. The inclusion of complementary data that support the conclusions drawn from the structural studies (such as binding studies, mass spectrometry, enzyme assays, or analysis of mutants or other modified forms of biological macromolecule) is encouraged. Methods articles may include new approaches to any aspect of biological structure determination or structure analysis but will only be accepted where they focus on new methods that are demonstrated to be of general applicability and importance to structural biology. Articles describing particularly difficult problems in structural biology are also welcomed, if the analysis would provide useful insights to others facing similar problems.
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