碳酸酐酶抑制剂在神经性疼痛治疗中的计算机对接研究

R. Sinha, Himanshu Singh, S. K. Bansal, R. Kaushik, K. Verma
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引用次数: 0

摘要

背景:本研究对碳酸酐酶抑制剂与4RUX(即人碳酸酐酶II蛋白晶体结构)在神经性疼痛治疗中的应用进行了硅对接研究。材料与方法:从RCSB PDB数据库中下载蛋白质PDB ID: 4RUX的晶体结构,从Marvin Sketch中绘制碳酸酐酶抑制剂的配体分子。利用AutoDock 4.2进行配体与蛋白质的对接研究,预测结合相互作用;利用Biovia Drug Discovery studio观察受体与配体复合物的相互作用。结果:碳酸酐酶抑制剂的结合能在-5.41 ~ -8.63之间。灵芝酸A的结合能为8.63 kcal/mol,优于乙酰唑胺的结合能6.22 kcal/mol。结论:在碳酸酐酶抑制剂中,灵芝酸A和森茚酮对碳酸酐酶II (PDB ID: 4RUX)具有较好的氢键和结合亲和力。由此可见,在碳酸酐酶抑制剂中,灵芝酸A(产自灵芝)和森茚酮(产自桑叶(NONI))具有较好的药理作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
IN-SILICO DOCKING STUDIES OF CARBONIC ANHYDRASE INHIBITORS IN THE MANAGEMENT OF NEUROPATHIC PAIN
Background: In the present study, the in-silico docking studies of carbonic anhydrase inhibitors with 4RUX i.e. The crystal Structure of Human carbonic Anhydrase II protein was performed in the management of neuropathic pain. Materials and Methods: The crystal structure of protein PDB ID: 4RUX was downloaded from the RCSB PDB database and the ligand molecules of carbonic anhydrase inhibitors were drawn from Marvin Sketch. Docking studies between ligand and protein to predict binding interactions by using AutoDock 4.2 and the receptor-ligand complex interaction viewed by using Biovia Drug Discovery studio. Result: Carbonic anhydrase inhibitors showed binding energy ranging between -5.41 to -8.63. Ganoderic acid A showed better binding energy -8.63 kcal/mol than the standard Acetazolamide -6.22 kcal/mol. Conclusion: The result clearly indicates that among carbonic anhydrase inhibitors, Ganoderic acid A and Morindone show better hydrogen bonding and binding affinity towards carbonic anhydrase II (PDB ID: 4RUX). Thus, conclude that among carbonic anhydrase inhibitors Ganoderic acid A (obtained from Ganoderma lucidium) and Morindone (both obtained from Morinda citrifolia (NONI)} provide the better pharmacological effect.
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