过氧化氢诱导肺炎链球菌D39蛋白表达的比较蛋白质组学分析

IF 0.5 4区 生物学 Q4 BIOCHEMICAL RESEARCH METHODS
Sungkyoung Lee, Myoung-Ro Lee, S. Bae, M. Kwak
{"title":"过氧化氢诱导肺炎链球菌D39蛋白表达的比较蛋白质组学分析","authors":"Sungkyoung Lee, Myoung-Ro Lee, S. Bae, M. Kwak","doi":"10.2174/1570164618999210104223526","DOIUrl":null,"url":null,"abstract":"\n\nStreptococcus pneumoniae is a leading cause of human respiratory tract infection. Despite the lack\nof activities of antioxidative enzymes, including cytochromes, hemoproteins, and peroxidases/catalases, traits conferring the\naerotolerant-anaerobic growth of this bacterium are conserved, with high efficacy of antioxidative actions, in an oxygen-rich\nenvironment.\n\n\n\nThrough proteome analysis, this study’s intention was to evaluate differentially expressed proteins and/or gene\nproducts modeled in a highly virulent strain, S. pneumoniae D39, exogenously-treated with millimolar concentrations of\nH2O2.\n\n\n\nFor two-dimensional gel electrophoresis (2-DE) analysis, following one dimensional isoelectric focusing with an\nimmobilized pH gradient of pH 4-7, the most significantly mobilized proteins expressed were separated by SDS-PAGE in\nthe second dimension. With a total of 431 protein spots detected, certain proteins were excised, in-gel trypsin digested, and\nanalyzed by combination with MALDI-TOF and LC-ESI-MS/MS for mass spectrometric peptide mapping and protein\nidentification. Utilizing mass spectrometry analysis of spots excised from 2-DE, the selected protein spots were identified\nwith a variety of databases and MASCOT.\n\n\n\nWith the aid of comparisons to proteome reference maps, the most differentially expressed 38 proteins, those with\napproximately 1.4-fold or more increase and/or decrease or with multiple isoforms exhibiting variable pI values, were\ninduced by treatment of exogenous 2 mM H2O2. The identified proteins were seen to be involved in pneumococcal\npathogenesis and primary metabolism, amongst others.\n\n\n\nThis is the first study to convincingly document proteomic information associated with pathophysiological\nadaptation under the given oxidative conditions, and corresponding potential antioxidative mechanisms, in S. pneumoniae.\n","PeriodicalId":50601,"journal":{"name":"Current Proteomics","volume":null,"pages":null},"PeriodicalIF":0.5000,"publicationDate":"2021-01-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Comparative Proteomic Analysis of Hydrogen Peroxide-induced Protein Expression in Streptococcus pneumoniae D39\",\"authors\":\"Sungkyoung Lee, Myoung-Ro Lee, S. Bae, M. Kwak\",\"doi\":\"10.2174/1570164618999210104223526\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"\\n\\nStreptococcus pneumoniae is a leading cause of human respiratory tract infection. Despite the lack\\nof activities of antioxidative enzymes, including cytochromes, hemoproteins, and peroxidases/catalases, traits conferring the\\naerotolerant-anaerobic growth of this bacterium are conserved, with high efficacy of antioxidative actions, in an oxygen-rich\\nenvironment.\\n\\n\\n\\nThrough proteome analysis, this study’s intention was to evaluate differentially expressed proteins and/or gene\\nproducts modeled in a highly virulent strain, S. pneumoniae D39, exogenously-treated with millimolar concentrations of\\nH2O2.\\n\\n\\n\\nFor two-dimensional gel electrophoresis (2-DE) analysis, following one dimensional isoelectric focusing with an\\nimmobilized pH gradient of pH 4-7, the most significantly mobilized proteins expressed were separated by SDS-PAGE in\\nthe second dimension. With a total of 431 protein spots detected, certain proteins were excised, in-gel trypsin digested, and\\nanalyzed by combination with MALDI-TOF and LC-ESI-MS/MS for mass spectrometric peptide mapping and protein\\nidentification. Utilizing mass spectrometry analysis of spots excised from 2-DE, the selected protein spots were identified\\nwith a variety of databases and MASCOT.\\n\\n\\n\\nWith the aid of comparisons to proteome reference maps, the most differentially expressed 38 proteins, those with\\napproximately 1.4-fold or more increase and/or decrease or with multiple isoforms exhibiting variable pI values, were\\ninduced by treatment of exogenous 2 mM H2O2. The identified proteins were seen to be involved in pneumococcal\\npathogenesis and primary metabolism, amongst others.\\n\\n\\n\\nThis is the first study to convincingly document proteomic information associated with pathophysiological\\nadaptation under the given oxidative conditions, and corresponding potential antioxidative mechanisms, in S. pneumoniae.\\n\",\"PeriodicalId\":50601,\"journal\":{\"name\":\"Current Proteomics\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.5000,\"publicationDate\":\"2021-01-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Current Proteomics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.2174/1570164618999210104223526\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Current Proteomics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.2174/1570164618999210104223526","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
引用次数: 0

摘要

肺炎链球菌是人类呼吸道感染的主要原因。尽管缺乏抗氧化酶的活性,包括细胞色素、血红蛋白和过氧化物酶/过氧化氢酶,但在富氧环境中,这种细菌具有耐氧-厌氧生长的特性是保守的,具有很高的抗氧化作用。通过蛋白质组学分析,本研究的目的是评估用毫摩尔浓度h2o2外源处理的高毒力菌株肺炎链球菌D39模型中差异表达的蛋白质和/或基因产物。对于二维凝胶电泳(2-DE)分析,在固定化pH梯度为pH 4-7的一维等电聚焦下,通过SDS-PAGE在二维上分离表达最显著的蛋白。共检测到431个蛋白点,切除部分蛋白,酶切凝胶内胰蛋白酶,结合MALDI-TOF和LC-ESI-MS/MS进行质谱多肽定位和蛋白鉴定。利用质谱分析从2-DE中切除的斑点,选择的蛋白质斑点与各种数据库和MASCOT进行鉴定。通过与蛋白质组参考图的比较,外源2mm H2O2处理诱导了38个差异表达最大的蛋白,这些蛋白的增加和/或减少约1.4倍或更多,或具有多个表现可变pI值的异构体。鉴定的蛋白质被认为与肺炎球菌的发病机制和初级代谢等有关。这是第一个令人信服地记录肺炎链球菌在给定氧化条件下与病理生理适应相关的蛋白质组学信息,以及相应的潜在抗氧化机制的研究。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Comparative Proteomic Analysis of Hydrogen Peroxide-induced Protein Expression in Streptococcus pneumoniae D39

Comparative Proteomic Analysis of Hydrogen Peroxide-induced Protein Expression in Streptococcus pneumoniae D39
Streptococcus pneumoniae is a leading cause of human respiratory tract infection. Despite the lack of activities of antioxidative enzymes, including cytochromes, hemoproteins, and peroxidases/catalases, traits conferring the aerotolerant-anaerobic growth of this bacterium are conserved, with high efficacy of antioxidative actions, in an oxygen-rich environment. Through proteome analysis, this study’s intention was to evaluate differentially expressed proteins and/or gene products modeled in a highly virulent strain, S. pneumoniae D39, exogenously-treated with millimolar concentrations of H2O2. For two-dimensional gel electrophoresis (2-DE) analysis, following one dimensional isoelectric focusing with an immobilized pH gradient of pH 4-7, the most significantly mobilized proteins expressed were separated by SDS-PAGE in the second dimension. With a total of 431 protein spots detected, certain proteins were excised, in-gel trypsin digested, and analyzed by combination with MALDI-TOF and LC-ESI-MS/MS for mass spectrometric peptide mapping and protein identification. Utilizing mass spectrometry analysis of spots excised from 2-DE, the selected protein spots were identified with a variety of databases and MASCOT. With the aid of comparisons to proteome reference maps, the most differentially expressed 38 proteins, those with approximately 1.4-fold or more increase and/or decrease or with multiple isoforms exhibiting variable pI values, were induced by treatment of exogenous 2 mM H2O2. The identified proteins were seen to be involved in pneumococcal pathogenesis and primary metabolism, amongst others. This is the first study to convincingly document proteomic information associated with pathophysiological adaptation under the given oxidative conditions, and corresponding potential antioxidative mechanisms, in S. pneumoniae.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Current Proteomics
Current Proteomics BIOCHEMICAL RESEARCH METHODS-BIOCHEMISTRY & MOLECULAR BIOLOGY
CiteScore
1.60
自引率
0.00%
发文量
25
审稿时长
>0 weeks
期刊介绍: Research in the emerging field of proteomics is growing at an extremely rapid rate. The principal aim of Current Proteomics is to publish well-timed in-depth/mini review articles in this fast-expanding area on topics relevant and significant to the development of proteomics. Current Proteomics is an essential journal for everyone involved in proteomics and related fields in both academia and industry. Current Proteomics publishes in-depth/mini review articles in all aspects of the fast-expanding field of proteomics. All areas of proteomics are covered together with the methodology, software, databases, technological advances and applications of proteomics, including functional proteomics. Diverse technologies covered include but are not limited to: Protein separation and characterization techniques 2-D gel electrophoresis and image analysis Techniques for protein expression profiling including mass spectrometry-based methods and algorithms for correlative database searching Determination of co-translational and post- translational modification of proteins Protein/peptide microarrays Biomolecular interaction analysis Analysis of protein complexes Yeast two-hybrid projects Protein-protein interaction (protein interactome) pathways and cell signaling networks Systems biology Proteome informatics (bioinformatics) Knowledge integration and management tools High-throughput protein structural studies (using mass spectrometry, nuclear magnetic resonance and X-ray crystallography) High-throughput computational methods for protein 3-D structure as well as function determination Robotics, nanotechnology, and microfluidics.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信