x射线晶体学结构测定。马克·拉德和雷克斯·帕尔默著。Pp. xlii + 819。纽约:Kluwer学术/全会出版社,2003年第4版。价格(平装本)41英镑。ISBN 0-306-47454-9。

IF 2.2 4区 生物学
J. Helliwell
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Moreover, all of the crystallographic data and the details of the structure determination are formatted in a crystallographic information file (CIF). It may be possible to submit a report of the crystal structure analysis without any knowledge of crystallography. However, the number of such ideal crystals whose structures are determined automatically is gradually decreasing. We must often analyze the structures of twinned crystals and crystals with disordered groups, solvate molecules or false symmetry. Deep knowledge of crystallography is necessary to overcome such difficult problems. This book is well adapted not only for the beginner but also for the researcher if they want to know the basis of crystallography. In addition to basic crystallography, the following three chapters were added in this edition: X-ray Structure Determination with Powders (chapter 9); Proteins and Macromolecular X-ray Analysis (chapter 10); and Computer-Aided Crystallography (chapter 11). Recently the structure determination of organic and macromolecules using powder diffraction data has been extensively developed. In addition to an explanation of the methods of data collection, indexing and the assignment of the unit cell and space group, an outline of how to build the model structure is described. Not only the reciprocalspace method but also the several directspace methods are explained in detail. Several examples analyzed by powder diffraction are shown. There are many books on protein crystallography. However, I think it is adequate, as the authors suggest in chapter 10, that, although there are definite distinctions between large and small molecules in the crystallographic arena, there is no reason to exclude one from the other, and that there are many advantages of being familiar with both. 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引用次数: 0

摘要

当编辑们要求我为第四版写一篇书评时,我非常惊讶地发现IUCr期刊上没有对前几个版本的书评,因为《Ladd & Palmer》是一本非常著名的关于晶体结构测定的基础书籍。因此,我接受了写这篇评论,虽然这是三年前的版本。目前,利用带二维探测器的衍射仪在2 ~ 3小时内自动采集强度数据,利用方便的软件包可自动求解晶体结构。晶体和分子结构将被绘制在个人电脑的显示器上。此外,所有晶体学数据和结构确定的细节都格式化为晶体学信息文件(CIF)。在没有任何晶体学知识的情况下,也可以提交晶体结构分析报告。然而,这种可以自动确定结构的理想晶体的数量正在逐渐减少。我们必须经常分析孪晶和无序基团、溶剂化物分子或假对称晶体的结构。要克服这些难题,对晶体学有深入的了解是必要的。这本书是很好的适应不仅为初学者,但也为研究人员,如果他们想知道晶体学的基础。除基本晶体学外,本版本增加了以下三章:粉末x射线结构测定(第9章);蛋白质和大分子x射线分析(第十章);和计算机辅助晶体学(第11章)。近年来,利用粉末衍射数据测定有机分子和大分子的结构得到了广泛的发展。除了解释数据收集、索引以及单元格和空间组的分配方法外,还描述了如何构建模型结构的大纲。不仅对往复式空间法进行了详细的说明,而且对几种直接空间法进行了详细的说明。给出了粉末衍射分析的几个实例。有很多关于蛋白质晶体学的书。然而,正如作者在第10章中所建议的那样,我认为这是足够的,尽管在晶体学领域中大分子和小分子之间存在明确的区别,但没有理由将其中一个排除在另一个之外,并且熟悉两者有许多好处。本章包括结晶方法、数据收集和处理方法、利用同构置换、分子置换和多波长异常色散确定相以及密度修正、模拟退火和最小二乘法等结构改进方法。计算是任何现代晶体学研究的基本特征。第11章用几个例子解释了单晶和粉末结构测定的基本计算程序。程序和数据都附在书的封底内的一张CD上。阅读器可以方便地分析和显示运行程序的结构。这是一篇了不起的文章。仅凭这本书就可以研究各种各样的晶体学。每章末尾的练习对晶体学的初学者很有指导意义。对主要文献的许多参考文献为进一步研究提供了切入点。然而,令人遗憾的是,最近的结构确定要求是缺失的。为了将分析的结构提交给Acta Crystallographica IUCr期刊,必须满足一些要求;例如,在小分子的结构分析中,最大衍射角,数据收集中的“完整性”,反射次数超过参数数量的十倍,以及F的最小二乘细化。我认为有必要解释为什么在期刊中引入这些要求。关于CIFs的信息非常重要,尽管书中没有给出解释。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Structure Determination by X-ray Crystallography. By Mark Ladd and Rex Palmer. Pp. xlii + 819. New York: Kluwer Academic/Plenum Publishers, 4th ed., 2003. Price (paperback) GBP 41. ISBN 0-306-47454-9.
I was very surprised when I was asked by the Editors to write a book review of this Fourth Edition to find that there was no book review for the former editions in the IUCr journals, since ‘Ladd & Palmer’ is a very famous and fundamental book on the subject of crystal structure determination. Therefore, I accepted to write the review, although this edition was published about three years ago. Currently, intensity data are collected automatically within two or three hours using a diffractometer with a twodimensional detector, and the crystal structure can be solved automatically using a convenient software package. The crystal and molecular structures will be drawn on the display of the personal computer. Moreover, all of the crystallographic data and the details of the structure determination are formatted in a crystallographic information file (CIF). It may be possible to submit a report of the crystal structure analysis without any knowledge of crystallography. However, the number of such ideal crystals whose structures are determined automatically is gradually decreasing. We must often analyze the structures of twinned crystals and crystals with disordered groups, solvate molecules or false symmetry. Deep knowledge of crystallography is necessary to overcome such difficult problems. This book is well adapted not only for the beginner but also for the researcher if they want to know the basis of crystallography. In addition to basic crystallography, the following three chapters were added in this edition: X-ray Structure Determination with Powders (chapter 9); Proteins and Macromolecular X-ray Analysis (chapter 10); and Computer-Aided Crystallography (chapter 11). Recently the structure determination of organic and macromolecules using powder diffraction data has been extensively developed. In addition to an explanation of the methods of data collection, indexing and the assignment of the unit cell and space group, an outline of how to build the model structure is described. Not only the reciprocalspace method but also the several directspace methods are explained in detail. Several examples analyzed by powder diffraction are shown. There are many books on protein crystallography. However, I think it is adequate, as the authors suggest in chapter 10, that, although there are definite distinctions between large and small molecules in the crystallographic arena, there is no reason to exclude one from the other, and that there are many advantages of being familiar with both. The chapter includes the methods of crystallization, data collection and processing, phase determination using isomorphous replacement, molecular replacement and multiple-wavelength anomalous dispersion, and structure refinement such as density modification, simulated annealing and least-squares methods. Computing is an essential feature in any modern crystallographic investigation. The basic computation programs for singlecrystal and powder structure determinations are explained in chapter 11 using several examples. The programs and data are supplied on a CD which is attached inside the back cover of the book. The reader can easily analyze and display the structures operating the programs. This is a remarkable text. A wide variety of crystallography can be surveyed with this book only. The exercises at the end of each chapter are very instructive for beginners in crystallography. The many references to the primary literature offer entry points for further study. However, it is regrettable to say that recent requirements for structure determination are missing. In order to submit the analyzed structure to the Acta Crystallographica IUCr journals, some requirements should be satisfied; for example, in the structure analyses of small molecules, the maximum diffraction angle, ‘completeness’ in data collection, the number of reflections more than ten times of the number of parameters, and the leastsquares refinement on F . I think it is essential to explain the reason why such requirements were introduced in the journals. Information on CIFs is very important although no explanation is given in the book.
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来源期刊
自引率
13.60%
发文量
0
审稿时长
3 months
期刊介绍: Acta Crystallographica Section D welcomes the submission of articles covering any aspect of structural biology, with a particular emphasis on the structures of biological macromolecules or the methods used to determine them. Reports on new structures of biological importance may address the smallest macromolecules to the largest complex molecular machines. These structures may have been determined using any structural biology technique including crystallography, NMR, cryoEM and/or other techniques. The key criterion is that such articles must present significant new insights into biological, chemical or medical sciences. The inclusion of complementary data that support the conclusions drawn from the structural studies (such as binding studies, mass spectrometry, enzyme assays, or analysis of mutants or other modified forms of biological macromolecule) is encouraged. Methods articles may include new approaches to any aspect of biological structure determination or structure analysis but will only be accepted where they focus on new methods that are demonstrated to be of general applicability and importance to structural biology. Articles describing particularly difficult problems in structural biology are also welcomed, if the analysis would provide useful insights to others facing similar problems.
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