协同蛋白质组学框架与XML数据库和集成的XML查看器为2DPAGE

H. Morisawa, H. Hisatomi, M. Hirota, T. Toda
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引用次数: 2

摘要

我们开发了一个基于XML的2DPAGE数据库和针对蛋白质组数据库优化的XML查看器的协同蛋白质组学框架。在开发框架之前,我们优化了TMIG-XML-2DPAGE数据库的XML格式,以便在协作研究社区中有效地共享数据。数据格式由2层二维凝胶图和斑点蛋白信息组成。用PHP编写的蛋白质组数据管理系统和用Object Pascal编写的XML查看器都提供了可点击imagemap表示点蛋白质信息的功能。使用XML查看器的功能,可以很容易地将实验二维凝胶图像上的单个点与TMIG-XML-2DPAGE数据库中标准二维凝胶图上的相应点进行匹配。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Collaborative proteomics framework with XML databases and an integrated XML viewer for 2DPAGE
SUMMARY We developed a collaborative proteomics framework with XML-based 2DPAGE database and XML viewer optimized for the proteome database. Prior to the development of the framework, we optimized the XML format of our TMIG-XML-2DPAGE database for efficient data sharing in a collaborative research community. The data format is comprised with 2 layers of 2-D gel map and spot protein information. The function of clickable imagemap for representing spot protein information is available both in the proteome data management system with PHP and in the XML viewer with Object Pascal. Individual spots on an experimental 2-D gel image are easily matched to corresponding spots on a standard 2-D gel map in the TMIG-XML-2DPAGE database using the function of the XML viewer.
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