拟南芥和玉米过氧化氢酶基因家族的生物信息学分析

Shengnan Ge, Yulei Wei, Jinjie Zhang, Wenjing Shao, Jiaxin Li, D. Ding, Meng Liu, Jingyu Xu
{"title":"拟南芥和玉米过氧化氢酶基因家族的生物信息学分析","authors":"Shengnan Ge, Yulei Wei, Jinjie Zhang, Wenjing Shao, Jiaxin Li, D. Ding, Meng Liu, Jingyu Xu","doi":"10.5376/mpb.2021.12.0034","DOIUrl":null,"url":null,"abstract":"Catalase (CAT) is an antioxidant enzyme, which plays a key role in plant development and abiotic stress response. In this study, three maize ZmCATs and three Arabidopsis AtCATs genes were identified by screening NCBI and phytozome databases. The protein characteristics, evolutionary relationship, gene structure, protein secondary and tertiary structure, gene expression at different developmental stages or under abiotic stress treatment were analyzed. The results showed that there were some similarities between CAT families from the two species. The proteins encoded by ZmCATs and AtCATs genes were hydrophobic. According to phylogenetic tree analysis, CATs gene family was divided into two subfamilies. ZmCATs and AtCATs both contain two conserved domains, and the secondary structures of ZmCATs and AtCATs protein are mainly α-helix and random coils. The cluster analysis of ZmCATs expression in different growth and development stages showed that ZmCAT1 , ZmCAT2 and ZmCAT3 were highly expressed in maize growth and development stage. Under abiotic stress, the expression of ZmCATs gene was significantly affected by temperature stress. The results of this study provide a theoretical basis for exploring the function of CAT in maize and other crops.","PeriodicalId":32255,"journal":{"name":"Journal of Plant Molecular Breeding","volume":"6 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2021-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"Bioinformatic Analysis of Catalase Gene Family of Arabidopsis and Maize\",\"authors\":\"Shengnan Ge, Yulei Wei, Jinjie Zhang, Wenjing Shao, Jiaxin Li, D. Ding, Meng Liu, Jingyu Xu\",\"doi\":\"10.5376/mpb.2021.12.0034\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Catalase (CAT) is an antioxidant enzyme, which plays a key role in plant development and abiotic stress response. In this study, three maize ZmCATs and three Arabidopsis AtCATs genes were identified by screening NCBI and phytozome databases. The protein characteristics, evolutionary relationship, gene structure, protein secondary and tertiary structure, gene expression at different developmental stages or under abiotic stress treatment were analyzed. The results showed that there were some similarities between CAT families from the two species. The proteins encoded by ZmCATs and AtCATs genes were hydrophobic. According to phylogenetic tree analysis, CATs gene family was divided into two subfamilies. ZmCATs and AtCATs both contain two conserved domains, and the secondary structures of ZmCATs and AtCATs protein are mainly α-helix and random coils. The cluster analysis of ZmCATs expression in different growth and development stages showed that ZmCAT1 , ZmCAT2 and ZmCAT3 were highly expressed in maize growth and development stage. Under abiotic stress, the expression of ZmCATs gene was significantly affected by temperature stress. The results of this study provide a theoretical basis for exploring the function of CAT in maize and other crops.\",\"PeriodicalId\":32255,\"journal\":{\"name\":\"Journal of Plant Molecular Breeding\",\"volume\":\"6 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2021-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Plant Molecular Breeding\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.5376/mpb.2021.12.0034\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Plant Molecular Breeding","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.5376/mpb.2021.12.0034","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 2

摘要

过氧化氢酶(CAT)是一种抗氧化酶,在植物发育和非生物胁迫反应中起着重要作用。本研究通过筛选NCBI和phytozome数据库,鉴定了3个玉米ZmCATs和3个拟南芥AtCATs基因。分析了不同发育阶段和非生物胁迫处理下的蛋白质特征、进化关系、基因结构、蛋白质二级和三级结构、基因表达。结果表明,两种植物的CAT科存在一定的相似性。ZmCATs和AtCATs基因编码的蛋白为疏水性蛋白。根据系统发育树分析,将CATs基因家族划分为两个亚家族。ZmCATs和AtCATs均含有两个保守结构域,ZmCATs和AtCATs蛋白的二级结构主要为α-螺旋结构和随机螺旋结构。ZmCAT1、ZmCAT2和ZmCAT3在玉米生长发育阶段表达量较高。在非生物胁迫下,温度胁迫对ZmCATs基因的表达有显著影响。本研究结果为探索CAT在玉米等作物中的功能提供了理论依据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Bioinformatic Analysis of Catalase Gene Family of Arabidopsis and Maize
Catalase (CAT) is an antioxidant enzyme, which plays a key role in plant development and abiotic stress response. In this study, three maize ZmCATs and three Arabidopsis AtCATs genes were identified by screening NCBI and phytozome databases. The protein characteristics, evolutionary relationship, gene structure, protein secondary and tertiary structure, gene expression at different developmental stages or under abiotic stress treatment were analyzed. The results showed that there were some similarities between CAT families from the two species. The proteins encoded by ZmCATs and AtCATs genes were hydrophobic. According to phylogenetic tree analysis, CATs gene family was divided into two subfamilies. ZmCATs and AtCATs both contain two conserved domains, and the secondary structures of ZmCATs and AtCATs protein are mainly α-helix and random coils. The cluster analysis of ZmCATs expression in different growth and development stages showed that ZmCAT1 , ZmCAT2 and ZmCAT3 were highly expressed in maize growth and development stage. Under abiotic stress, the expression of ZmCATs gene was significantly affected by temperature stress. The results of this study provide a theoretical basis for exploring the function of CAT in maize and other crops.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
审稿时长
16 weeks
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信