{"title":"难处理似然贝叶斯推理的Barker算法","authors":"F. Gonccalves, K. Latuszy'nski, G. Roberts","doi":"10.1214/17-BJPS374","DOIUrl":null,"url":null,"abstract":"In this expository paper we abstract and describe a simple MCMC scheme for sampling from intractable target densities. The approach has been introduced in Gon\\c{c}alves et al. (2017a) in the specific context of jump-diffusions, and is based on the Barker's algorithm paired with a simple Bernoulli factory type scheme, the so called 2-coin algorithm. In many settings it is an alternative to standard Metropolis-Hastings pseudo-marginal method for simulating from intractable target densities. Although Barker's is well-known to be slightly less efficient than Metropolis-Hastings, the key advantage of our approach is that it allows to implement the \"marginal Barker's\" instead of the extended state space pseudo-marginal Metropolis-Hastings, owing to the special form of the accept/reject probability. We shall illustrate our methodology in the context of Bayesian inference for discretely observed Wright-Fisher family of diffusions.","PeriodicalId":8446,"journal":{"name":"arXiv: Computation","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2017-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"8","resultStr":"{\"title\":\"Barker's algorithm for Bayesian inference with intractable likelihoods\",\"authors\":\"F. Gonccalves, K. Latuszy'nski, G. Roberts\",\"doi\":\"10.1214/17-BJPS374\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"In this expository paper we abstract and describe a simple MCMC scheme for sampling from intractable target densities. The approach has been introduced in Gon\\\\c{c}alves et al. (2017a) in the specific context of jump-diffusions, and is based on the Barker's algorithm paired with a simple Bernoulli factory type scheme, the so called 2-coin algorithm. In many settings it is an alternative to standard Metropolis-Hastings pseudo-marginal method for simulating from intractable target densities. Although Barker's is well-known to be slightly less efficient than Metropolis-Hastings, the key advantage of our approach is that it allows to implement the \\\"marginal Barker's\\\" instead of the extended state space pseudo-marginal Metropolis-Hastings, owing to the special form of the accept/reject probability. We shall illustrate our methodology in the context of Bayesian inference for discretely observed Wright-Fisher family of diffusions.\",\"PeriodicalId\":8446,\"journal\":{\"name\":\"arXiv: Computation\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2017-09-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"8\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv: Computation\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1214/17-BJPS374\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv: Computation","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1214/17-BJPS374","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Barker's algorithm for Bayesian inference with intractable likelihoods
In this expository paper we abstract and describe a simple MCMC scheme for sampling from intractable target densities. The approach has been introduced in Gon\c{c}alves et al. (2017a) in the specific context of jump-diffusions, and is based on the Barker's algorithm paired with a simple Bernoulli factory type scheme, the so called 2-coin algorithm. In many settings it is an alternative to standard Metropolis-Hastings pseudo-marginal method for simulating from intractable target densities. Although Barker's is well-known to be slightly less efficient than Metropolis-Hastings, the key advantage of our approach is that it allows to implement the "marginal Barker's" instead of the extended state space pseudo-marginal Metropolis-Hastings, owing to the special form of the accept/reject probability. We shall illustrate our methodology in the context of Bayesian inference for discretely observed Wright-Fisher family of diffusions.