正则化Cox回归模型改进基因选择的研究性建模方法

Q3 Mathematics
G. Abdallh, Z. Algamal
{"title":"正则化Cox回归模型改进基因选择的研究性建模方法","authors":"G. Abdallh, Z. Algamal","doi":"10.17537/2023.18.282","DOIUrl":null,"url":null,"abstract":"\n By producing the required proteins, the process of gene expression establishes the physical properties of living things. Gene expression from DNA or RNA may be recorded using a variety of approaches. Regression analysis has evolved in prominence in the area of genetic research recently. Several of the genes in high dimensional gene expression information for statistical inference may not be related to their illnesses, which is one of the major problems. The ability of gene selection to enhance the outcomes of several techniques has been demonstrated. For censored survival data, the Cox proportional hazards regression model is the most widely used model. In order to identify important genes and achieve high classification accuracy, a new technique for selecting the tuning parameter is suggested in this study using an optimization algorithm. According to experimental findings, the suggested strategy performs much better than the two rival methods in terms of the area under the curve and the number of chosen genes. This study provides a comprehensive assessment of the latest work on performance evaluation of regression analysis in gene selection. In addition to its performance analysis, this research conducts a thorough assessment of the numerous efforts done on various extended models based on gene selection in recent years.\n","PeriodicalId":53525,"journal":{"name":"Mathematical Biology and Bioinformatics","volume":"1 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2023-07-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"An Investigational Modeling Approach for Improving Gene Selection using Regularized Cox Regression Model\",\"authors\":\"G. Abdallh, Z. Algamal\",\"doi\":\"10.17537/2023.18.282\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"\\n By producing the required proteins, the process of gene expression establishes the physical properties of living things. Gene expression from DNA or RNA may be recorded using a variety of approaches. Regression analysis has evolved in prominence in the area of genetic research recently. Several of the genes in high dimensional gene expression information for statistical inference may not be related to their illnesses, which is one of the major problems. The ability of gene selection to enhance the outcomes of several techniques has been demonstrated. For censored survival data, the Cox proportional hazards regression model is the most widely used model. In order to identify important genes and achieve high classification accuracy, a new technique for selecting the tuning parameter is suggested in this study using an optimization algorithm. According to experimental findings, the suggested strategy performs much better than the two rival methods in terms of the area under the curve and the number of chosen genes. This study provides a comprehensive assessment of the latest work on performance evaluation of regression analysis in gene selection. In addition to its performance analysis, this research conducts a thorough assessment of the numerous efforts done on various extended models based on gene selection in recent years.\\n\",\"PeriodicalId\":53525,\"journal\":{\"name\":\"Mathematical Biology and Bioinformatics\",\"volume\":\"1 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-07-20\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Mathematical Biology and Bioinformatics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.17537/2023.18.282\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"Mathematics\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mathematical Biology and Bioinformatics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.17537/2023.18.282","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Mathematics","Score":null,"Total":0}
引用次数: 0

摘要

通过产生所需的蛋白质,基因表达的过程建立了生物的物理特性。来自DNA或RNA的基因表达可以用多种方法记录。近年来,回归分析在遗传研究领域得到了突出的发展。一些基因在高维基因表达信息中进行统计推断可能与它们的疾病无关,这是主要问题之一。基因选择的能力,以提高结果的一些技术已被证明。对于截尾生存数据,Cox比例风险回归模型是最广泛使用的模型。为了识别重要基因并获得较高的分类精度,本研究提出了一种利用优化算法选择调谐参数的新技术。实验结果表明,该策略在曲线下面积和选择的基因数量方面都优于两种竞争方法。本文对基因选择中回归分析性能评价的最新研究进展进行了综述。除了性能分析之外,本研究还对近年来基于基因选择的各种扩展模型所做的大量工作进行了全面的评估。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
An Investigational Modeling Approach for Improving Gene Selection using Regularized Cox Regression Model
By producing the required proteins, the process of gene expression establishes the physical properties of living things. Gene expression from DNA or RNA may be recorded using a variety of approaches. Regression analysis has evolved in prominence in the area of genetic research recently. Several of the genes in high dimensional gene expression information for statistical inference may not be related to their illnesses, which is one of the major problems. The ability of gene selection to enhance the outcomes of several techniques has been demonstrated. For censored survival data, the Cox proportional hazards regression model is the most widely used model. In order to identify important genes and achieve high classification accuracy, a new technique for selecting the tuning parameter is suggested in this study using an optimization algorithm. According to experimental findings, the suggested strategy performs much better than the two rival methods in terms of the area under the curve and the number of chosen genes. This study provides a comprehensive assessment of the latest work on performance evaluation of regression analysis in gene selection. In addition to its performance analysis, this research conducts a thorough assessment of the numerous efforts done on various extended models based on gene selection in recent years.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Mathematical Biology and Bioinformatics
Mathematical Biology and Bioinformatics Mathematics-Applied Mathematics
CiteScore
1.10
自引率
0.00%
发文量
13
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信