{"title":"加拿大安大略省北部金属污染地区分离种群的17年潜在基因重组后分子变异的再评估","authors":"S. Rainville, P. Beckett, K. Nkongolo","doi":"10.3844/AJESSP.2017.289.296","DOIUrl":null,"url":null,"abstract":"The effects of ore extraction and processing procedures in the Greater Sudbury and Cobalt regions have been long-lasting. The objective of this study is to determine the current level of genetic variation in Deschampsia cespitosa populations from metal contaminated and uncontaminated sites in samples collected in Northern Ontario in 2016 after 17 years of potential genetic recombination since the last study in 1999. D. cespitosa leaf samples collected from the City of Greater Sudbury (CGS), Cobalt and Little Current were analyzed using ISSR primers. The levels of genetic variation were moderate to high within targeted populations. There was no significant difference (p≤0.05) in the overall percent of polymorphic loci in metal-uncontaminated site of Little Current (from 70% in 1999 to 77% in 2016) and in a Cobalt Cart Lake site (from 48% in 1999 to 55% in 2016). But a significant decrease in genetic variation was observed in CGS Wahnapitae site (from 72% in 1999 to 54% in 2016). On the other hand, a significant increase was observed in Cobalt Nipissing (from 46% in 1999 to 64% in 2016). The Kelly Lake site in the CGS with the lowest level of polymorphic loci (42.5%) in 2016 was not surveyed in 1999. The degree of genetic relatedness among sites has increased since the populations are more genetically closely related than 17 years ago. No population-specific ISSR marker was identified. The clustering of Cobalt and Sudbury populations strengthens the earlier theory that Sudbury populations of D. cespitosa might be from the Cobalt region.","PeriodicalId":7487,"journal":{"name":"American Journal of Environmental Sciences","volume":"403 1","pages":"289-296"},"PeriodicalIF":0.0000,"publicationDate":"2017-07-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Reassessment of Molecular Variation in Isolated Populations of Deschampsia cespitosa from Metal Contaminated Regions in Northern Ontario (Canada) after 17 Years of Potential Genetic Recombination\",\"authors\":\"S. Rainville, P. Beckett, K. Nkongolo\",\"doi\":\"10.3844/AJESSP.2017.289.296\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The effects of ore extraction and processing procedures in the Greater Sudbury and Cobalt regions have been long-lasting. The objective of this study is to determine the current level of genetic variation in Deschampsia cespitosa populations from metal contaminated and uncontaminated sites in samples collected in Northern Ontario in 2016 after 17 years of potential genetic recombination since the last study in 1999. D. cespitosa leaf samples collected from the City of Greater Sudbury (CGS), Cobalt and Little Current were analyzed using ISSR primers. The levels of genetic variation were moderate to high within targeted populations. There was no significant difference (p≤0.05) in the overall percent of polymorphic loci in metal-uncontaminated site of Little Current (from 70% in 1999 to 77% in 2016) and in a Cobalt Cart Lake site (from 48% in 1999 to 55% in 2016). But a significant decrease in genetic variation was observed in CGS Wahnapitae site (from 72% in 1999 to 54% in 2016). On the other hand, a significant increase was observed in Cobalt Nipissing (from 46% in 1999 to 64% in 2016). The Kelly Lake site in the CGS with the lowest level of polymorphic loci (42.5%) in 2016 was not surveyed in 1999. The degree of genetic relatedness among sites has increased since the populations are more genetically closely related than 17 years ago. No population-specific ISSR marker was identified. The clustering of Cobalt and Sudbury populations strengthens the earlier theory that Sudbury populations of D. cespitosa might be from the Cobalt region.\",\"PeriodicalId\":7487,\"journal\":{\"name\":\"American Journal of Environmental Sciences\",\"volume\":\"403 1\",\"pages\":\"289-296\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2017-07-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"American Journal of Environmental Sciences\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.3844/AJESSP.2017.289.296\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"American Journal of Environmental Sciences","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.3844/AJESSP.2017.289.296","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
在大萨德伯里和钴地区,矿石开采和加工程序的影响是持久的。自1999年最后一次研究以来,经过17年的潜在基因重组,本研究的目的是确定2016年在安大略省北部金属污染和未污染地点采集的样本中Deschampsia cespitosa种群的遗传变异水平。利用ISSR引物对大萨德伯里市(City of Greater Sudbury, CGS)、Cobalt和Little Current 3个产地的白斑叶样品进行了分析。在目标人群中,遗传变异水平是中等到高的。小流(Little Current)金属未污染地点的总体多态性位点百分比(从1999年的70%到2016年的77%)与钴车湖(Cobalt Cart Lake)地点的总体多态性位点百分比(从1999年的48%到2016年的55%)无显著差异(p≤0.05)。但CGS Wahnapitae位点的遗传变异显著下降(从1999年的72%降至2016年的54%)。另一方面,在Cobalt Nipissing中观察到显著增加(从1999年的46%增加到2016年的64%)。1999年未调查2016年多态性位点最低(42.5%)的CGS凯利湖遗址。由于种群的遗传关系比17年前更为密切,因此各地点之间的遗传亲缘关系程度有所提高。未发现群体特异性ISSR标记。钴和萨德伯里种群的聚集加强了早先的理论,即萨德伯里的D. cespitosa可能来自钴地区。
Reassessment of Molecular Variation in Isolated Populations of Deschampsia cespitosa from Metal Contaminated Regions in Northern Ontario (Canada) after 17 Years of Potential Genetic Recombination
The effects of ore extraction and processing procedures in the Greater Sudbury and Cobalt regions have been long-lasting. The objective of this study is to determine the current level of genetic variation in Deschampsia cespitosa populations from metal contaminated and uncontaminated sites in samples collected in Northern Ontario in 2016 after 17 years of potential genetic recombination since the last study in 1999. D. cespitosa leaf samples collected from the City of Greater Sudbury (CGS), Cobalt and Little Current were analyzed using ISSR primers. The levels of genetic variation were moderate to high within targeted populations. There was no significant difference (p≤0.05) in the overall percent of polymorphic loci in metal-uncontaminated site of Little Current (from 70% in 1999 to 77% in 2016) and in a Cobalt Cart Lake site (from 48% in 1999 to 55% in 2016). But a significant decrease in genetic variation was observed in CGS Wahnapitae site (from 72% in 1999 to 54% in 2016). On the other hand, a significant increase was observed in Cobalt Nipissing (from 46% in 1999 to 64% in 2016). The Kelly Lake site in the CGS with the lowest level of polymorphic loci (42.5%) in 2016 was not surveyed in 1999. The degree of genetic relatedness among sites has increased since the populations are more genetically closely related than 17 years ago. No population-specific ISSR marker was identified. The clustering of Cobalt and Sudbury populations strengthens the earlier theory that Sudbury populations of D. cespitosa might be from the Cobalt region.