S. S. Amaral, P. T. Campos, Josiane M. dos Santos, L. S. Fernandes, M. Martins, H. Bonacorso, N. Zanatta
{"title":"2-(N ' -苄基肼基)-4-三氟甲基嘧啶和2-(N ' -2-甲基苄基肼基)-5-甲基-4-三氟甲基嘧啶的晶体结构、芳族性质和AM1计算","authors":"S. S. Amaral, P. T. Campos, Josiane M. dos Santos, L. S. Fernandes, M. Martins, H. Bonacorso, N. Zanatta","doi":"10.2174/1874846501003010059","DOIUrl":null,"url":null,"abstract":"The structure of two novel 2-(N'-benzylidenehydrazino)-4-trifluoromethyl-pyrimidines has been determined by X-ray crystallography and their energy-minimized structures were stablished by molecular orbital calculations (AM1) by means of comparison. Additionally, the bond lengths of the compounds were analyzed in order to verify the occurance of electronic resonance. Bond lengths and bond angles in the pyrimidine ring and the benzylidene portion compare well with those found in similar compounds. 2-(N'-benzylidenehydrazino)-4-trifluoromethyl-pyrimidine, crystallized in the triclinic space group P-1 solvated with a molecule of water, while 2-(N'-2-methyl-benzylidenehydrazino)-5-methyl-4- trifluoromethyl-pyrimidine crystallized in the tetragonal space group P41. The azomethine moieties showed a trans-planar conformation. The energy-minimized structures of both compounds are in good agreement with their X-ray crystal structures. Nevertheless, a significant difference between calculated and experimental data regarding to the ring planarity was observed due to relevant intermolecular interactions in the real structures. Finally, aromaticities of both pyrimidines and phenyl rings were determined using HOMA calculations.","PeriodicalId":23072,"journal":{"name":"The Open Crystallography Journal","volume":"13 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2010-06-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"6","resultStr":"{\"title\":\"Crystal Structure, Aromatic Character and AM1 Calculations of 2-(N’-Benzylidenehydrazino)-4-trifluoromethyl-pyrimidine and 2-(N’-2-Methylbenzylidenehydrazino)-5-methyl-4-trifluoromethyl-pyrimidine\",\"authors\":\"S. S. Amaral, P. T. Campos, Josiane M. dos Santos, L. S. Fernandes, M. Martins, H. Bonacorso, N. Zanatta\",\"doi\":\"10.2174/1874846501003010059\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The structure of two novel 2-(N'-benzylidenehydrazino)-4-trifluoromethyl-pyrimidines has been determined by X-ray crystallography and their energy-minimized structures were stablished by molecular orbital calculations (AM1) by means of comparison. Additionally, the bond lengths of the compounds were analyzed in order to verify the occurance of electronic resonance. Bond lengths and bond angles in the pyrimidine ring and the benzylidene portion compare well with those found in similar compounds. 2-(N'-benzylidenehydrazino)-4-trifluoromethyl-pyrimidine, crystallized in the triclinic space group P-1 solvated with a molecule of water, while 2-(N'-2-methyl-benzylidenehydrazino)-5-methyl-4- trifluoromethyl-pyrimidine crystallized in the tetragonal space group P41. The azomethine moieties showed a trans-planar conformation. The energy-minimized structures of both compounds are in good agreement with their X-ray crystal structures. Nevertheless, a significant difference between calculated and experimental data regarding to the ring planarity was observed due to relevant intermolecular interactions in the real structures. Finally, aromaticities of both pyrimidines and phenyl rings were determined using HOMA calculations.\",\"PeriodicalId\":23072,\"journal\":{\"name\":\"The Open Crystallography Journal\",\"volume\":\"13 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2010-06-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"6\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"The Open Crystallography Journal\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.2174/1874846501003010059\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"The Open Crystallography Journal","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.2174/1874846501003010059","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Crystal Structure, Aromatic Character and AM1 Calculations of 2-(N’-Benzylidenehydrazino)-4-trifluoromethyl-pyrimidine and 2-(N’-2-Methylbenzylidenehydrazino)-5-methyl-4-trifluoromethyl-pyrimidine
The structure of two novel 2-(N'-benzylidenehydrazino)-4-trifluoromethyl-pyrimidines has been determined by X-ray crystallography and their energy-minimized structures were stablished by molecular orbital calculations (AM1) by means of comparison. Additionally, the bond lengths of the compounds were analyzed in order to verify the occurance of electronic resonance. Bond lengths and bond angles in the pyrimidine ring and the benzylidene portion compare well with those found in similar compounds. 2-(N'-benzylidenehydrazino)-4-trifluoromethyl-pyrimidine, crystallized in the triclinic space group P-1 solvated with a molecule of water, while 2-(N'-2-methyl-benzylidenehydrazino)-5-methyl-4- trifluoromethyl-pyrimidine crystallized in the tetragonal space group P41. The azomethine moieties showed a trans-planar conformation. The energy-minimized structures of both compounds are in good agreement with their X-ray crystal structures. Nevertheless, a significant difference between calculated and experimental data regarding to the ring planarity was observed due to relevant intermolecular interactions in the real structures. Finally, aromaticities of both pyrimidines and phenyl rings were determined using HOMA calculations.