ODEs耦合系统的数值分析及其在酶促竞争性抑制副产物中的应用

V. Mai, T. Nhan
{"title":"ODEs耦合系统的数值分析及其在酶促竞争性抑制副产物中的应用","authors":"V. Mai, T. Nhan","doi":"10.31197/ATNAA.820590","DOIUrl":null,"url":null,"abstract":"Enzymatic inhibition is one of the key regulatory mechanisms in cellular metabolism, especially the enzymatic competitive inhibition by product. This inhibition process helps the cell regulate enzymatic activities. In this paper, we derive a mathematical model describing the enzymatic competitive inhibition by product. The model consists of a coupled system of nonlinear ordinary differential equations for the species of interest. Using nondimensionalization analysis, a formula for product formation rate for this mechanism is obtained in a transparent manner. Further analysis for this formula yields qualitative insights into the maximal reaction velocity and apparent Michaelis-Menten constant. Integrating the model numerically, the effects of the model parameters on the model output are also investigated. Finally, a potential application of the model to realistic enzymes is briefly discussed.","PeriodicalId":7440,"journal":{"name":"Advances in the Theory of Nonlinear Analysis and its Application","volume":"41 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2020-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Numerical analysis of coupled systems of ODEs and applications to enzymatic competitive inhibition by product\",\"authors\":\"V. Mai, T. Nhan\",\"doi\":\"10.31197/ATNAA.820590\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Enzymatic inhibition is one of the key regulatory mechanisms in cellular metabolism, especially the enzymatic competitive inhibition by product. This inhibition process helps the cell regulate enzymatic activities. In this paper, we derive a mathematical model describing the enzymatic competitive inhibition by product. The model consists of a coupled system of nonlinear ordinary differential equations for the species of interest. Using nondimensionalization analysis, a formula for product formation rate for this mechanism is obtained in a transparent manner. Further analysis for this formula yields qualitative insights into the maximal reaction velocity and apparent Michaelis-Menten constant. Integrating the model numerically, the effects of the model parameters on the model output are also investigated. Finally, a potential application of the model to realistic enzymes is briefly discussed.\",\"PeriodicalId\":7440,\"journal\":{\"name\":\"Advances in the Theory of Nonlinear Analysis and its Application\",\"volume\":\"41 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-12-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Advances in the Theory of Nonlinear Analysis and its Application\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.31197/ATNAA.820590\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Advances in the Theory of Nonlinear Analysis and its Application","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.31197/ATNAA.820590","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1

摘要

酶抑制是细胞代谢的关键调控机制之一,尤其是酶的竞争性抑制副产物。这种抑制过程有助于细胞调节酶的活性。本文推导了一个描述酶竞争性抑制副产物的数学模型。该模型由一个非线性常微分方程的耦合系统组成。通过无量纲化分析,得到了该机理的产物生成速率公式。对该公式的进一步分析可以定性地了解最大反应速度和表观米切里斯-门腾常数。对模型进行数值积分,研究了模型参数对模型输出的影响。最后,简要讨论了该模型在现实酶中的潜在应用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Numerical analysis of coupled systems of ODEs and applications to enzymatic competitive inhibition by product
Enzymatic inhibition is one of the key regulatory mechanisms in cellular metabolism, especially the enzymatic competitive inhibition by product. This inhibition process helps the cell regulate enzymatic activities. In this paper, we derive a mathematical model describing the enzymatic competitive inhibition by product. The model consists of a coupled system of nonlinear ordinary differential equations for the species of interest. Using nondimensionalization analysis, a formula for product formation rate for this mechanism is obtained in a transparent manner. Further analysis for this formula yields qualitative insights into the maximal reaction velocity and apparent Michaelis-Menten constant. Integrating the model numerically, the effects of the model parameters on the model output are also investigated. Finally, a potential application of the model to realistic enzymes is briefly discussed.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信