冷等离子体处理铜绿假单胞菌的转录组研究

IF 0.6 4区 综合性期刊 Q3 MULTIDISCIPLINARY SCIENCES
Kok Jun Liew, Xinhua Zhang, Xiaohong Cai, Dongdong Ren, Wei Liu, Z. Chang, Chun Shiong Chong
{"title":"冷等离子体处理铜绿假单胞菌的转录组研究","authors":"Kok Jun Liew, Xinhua Zhang, Xiaohong Cai, Dongdong Ren, Wei Liu, Z. Chang, Chun Shiong Chong","doi":"10.12982/cmjs.2023.014","DOIUrl":null,"url":null,"abstract":"C old plasma is a disinfection technique widely used in food, agricultural, and medical industries. This work used cold plasma to sterilize Pseudomonas aeruginosa and cell survivability was determined. RNA sequencing was used to determine the bacterial responses at 1 minute (T1), 3 minutes (T3), and 5 minutes (T5) of cold plasma treatments. The results show that longer treatment leads to lower cell survivability. Cold plasma induced rapid cell responses in P. aeruginosa. Gene Ontology enrichment analysis showed that T5 had the most enriched terms compared to T1 and T3. The most affected genes were those involved in antioxidant production, transcriptional regulators, ribosome formation, transporters, chemotaxis, and cell motility. P. aeruginosa’s initial response (T1) to cold plasma involved the upregulation of antioxidant genes, followed by the downregulation of transcriptional regulators, transporters, chemotaxis, and cell motility as the intermediate response (T3), and the final response (T5) included heavy downregulation in ribosome formation. Previous transcriptome studies of cold plasma focused mainly on prokaryotic cells such as E. coli and B. subtilis, while studies on P. aeruginosa are limited. This study demonstrated the sequential response of P. aeruginosa against cold plasma via transcriptome analysis.","PeriodicalId":9884,"journal":{"name":"Chiang Mai Journal of Science","volume":"46 1","pages":""},"PeriodicalIF":0.6000,"publicationDate":"2023-03-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Transcriptome Study of Cold Plasma Treated Pseudomonas aeruginosa\",\"authors\":\"Kok Jun Liew, Xinhua Zhang, Xiaohong Cai, Dongdong Ren, Wei Liu, Z. Chang, Chun Shiong Chong\",\"doi\":\"10.12982/cmjs.2023.014\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"C old plasma is a disinfection technique widely used in food, agricultural, and medical industries. This work used cold plasma to sterilize Pseudomonas aeruginosa and cell survivability was determined. RNA sequencing was used to determine the bacterial responses at 1 minute (T1), 3 minutes (T3), and 5 minutes (T5) of cold plasma treatments. The results show that longer treatment leads to lower cell survivability. Cold plasma induced rapid cell responses in P. aeruginosa. Gene Ontology enrichment analysis showed that T5 had the most enriched terms compared to T1 and T3. The most affected genes were those involved in antioxidant production, transcriptional regulators, ribosome formation, transporters, chemotaxis, and cell motility. P. aeruginosa’s initial response (T1) to cold plasma involved the upregulation of antioxidant genes, followed by the downregulation of transcriptional regulators, transporters, chemotaxis, and cell motility as the intermediate response (T3), and the final response (T5) included heavy downregulation in ribosome formation. Previous transcriptome studies of cold plasma focused mainly on prokaryotic cells such as E. coli and B. subtilis, while studies on P. aeruginosa are limited. This study demonstrated the sequential response of P. aeruginosa against cold plasma via transcriptome analysis.\",\"PeriodicalId\":9884,\"journal\":{\"name\":\"Chiang Mai Journal of Science\",\"volume\":\"46 1\",\"pages\":\"\"},\"PeriodicalIF\":0.6000,\"publicationDate\":\"2023-03-31\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Chiang Mai Journal of Science\",\"FirstCategoryId\":\"103\",\"ListUrlMain\":\"https://doi.org/10.12982/cmjs.2023.014\",\"RegionNum\":4,\"RegionCategory\":\"综合性期刊\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"MULTIDISCIPLINARY SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chiang Mai Journal of Science","FirstCategoryId":"103","ListUrlMain":"https://doi.org/10.12982/cmjs.2023.014","RegionNum":4,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"MULTIDISCIPLINARY SCIENCES","Score":null,"Total":0}
引用次数: 0

摘要

C - old血浆是一种广泛应用于食品、农业和医疗行业的消毒技术。本研究利用冷等离子体对铜绿假单胞菌进行灭菌,并测定细胞存活率。RNA测序用于测定冷等离子体处理1分钟(T1)、3分钟(T3)和5分钟(T5)时细菌的反应。结果表明,治疗时间越长,细胞存活率越低。冷等离子体诱导铜绿假单胞菌快速细胞反应。基因本体富集分析结果表明,与T1和T3相比,T5的富集项最多。受影响最大的基因是那些参与抗氧化产生、转录调节、核糖体形成、转运蛋白、趋化性和细胞运动性的基因。P. aeruginosa对低温血浆的初始反应(T1)包括抗氧化基因的上调,随后转录调节因子、转运蛋白、趋化性和细胞运动的下调作为中间反应(T3),最终反应(T5)包括核糖体形成的严重下调。以往对冷血浆转录组的研究主要集中在大肠杆菌和枯草芽孢杆菌等原核细胞上,而对铜绿假单胞菌的研究较少。本研究通过转录组分析证实了铜绿假单胞菌对冷血浆的序列反应。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Transcriptome Study of Cold Plasma Treated Pseudomonas aeruginosa
C old plasma is a disinfection technique widely used in food, agricultural, and medical industries. This work used cold plasma to sterilize Pseudomonas aeruginosa and cell survivability was determined. RNA sequencing was used to determine the bacterial responses at 1 minute (T1), 3 minutes (T3), and 5 minutes (T5) of cold plasma treatments. The results show that longer treatment leads to lower cell survivability. Cold plasma induced rapid cell responses in P. aeruginosa. Gene Ontology enrichment analysis showed that T5 had the most enriched terms compared to T1 and T3. The most affected genes were those involved in antioxidant production, transcriptional regulators, ribosome formation, transporters, chemotaxis, and cell motility. P. aeruginosa’s initial response (T1) to cold plasma involved the upregulation of antioxidant genes, followed by the downregulation of transcriptional regulators, transporters, chemotaxis, and cell motility as the intermediate response (T3), and the final response (T5) included heavy downregulation in ribosome formation. Previous transcriptome studies of cold plasma focused mainly on prokaryotic cells such as E. coli and B. subtilis, while studies on P. aeruginosa are limited. This study demonstrated the sequential response of P. aeruginosa against cold plasma via transcriptome analysis.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Chiang Mai Journal of Science
Chiang Mai Journal of Science MULTIDISCIPLINARY SCIENCES-
CiteScore
1.00
自引率
25.00%
发文量
103
审稿时长
3 months
期刊介绍: The Chiang Mai Journal of Science is an international English language peer-reviewed journal which is published in open access electronic format 6 times a year in January, March, May, July, September and November by the Faculty of Science, Chiang Mai University. Manuscripts in most areas of science are welcomed except in areas such as agriculture, engineering and medical science which are outside the scope of the Journal. Currently, we focus on manuscripts in biology, chemistry, physics, materials science and environmental science. Papers in mathematics statistics and computer science are also included but should be of an applied nature rather than purely theoretical. Manuscripts describing experiments on humans or animals are required to provide proof that all experiments have been carried out according to the ethical regulations of the respective institutional and/or governmental authorities and this should be clearly stated in the manuscript itself. The Editor reserves the right to reject manuscripts that fail to do so.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信