Jian Liu, Ye Yuan, Peng Zhao, Xiao Gu, H. Huo, Zhaoyu Li, T. Fang
{"title":"神经元基序揭示了秀丽隐杆线虫神经网络的骨干结构和有影响的神经元","authors":"Jian Liu, Ye Yuan, Peng Zhao, Xiao Gu, H. Huo, Zhaoyu Li, T. Fang","doi":"10.1093/comnet/cnad013","DOIUrl":null,"url":null,"abstract":"\n Neural network elements such as motif, backbone and influential nodes play important roles in neural network computation. Increasing researches have been applying complex network methods in order to identify different essential structures within complex neural networks. However, the distinct properties of synapses that build the neural network are often neglected, such as the difference between chemical synapses and electrical synapses. By separating these distinct synapses, we can identify a novel repertoire of neural motifs and greatly expand neural motif families in neural systems. Based on the expanded motif families, we further propose a novel neural-motif-based algorithm to extract the backbone in the neural network. The backbone circuit we extracted from Caenorhabditis elegans connectome controls an essential motor behaviour in C. elegans. Furthermore, we develop a novel neural-motif-based algorithm to identify influential neurons. Compared with the influential neurons identified using existing methods, the neurons identified in this work provide more information in related to their functions. These methods have been successfully applied to identify a series of network features in C. elegans, providing a biologically interpretable way of exploring the structure of neural network.","PeriodicalId":15442,"journal":{"name":"Journal of complex networks","volume":"283 1","pages":""},"PeriodicalIF":2.2000,"publicationDate":"2023-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Neuronal motifs reveal backbone structure and influential neurons of neural network in C. elegans\",\"authors\":\"Jian Liu, Ye Yuan, Peng Zhao, Xiao Gu, H. Huo, Zhaoyu Li, T. Fang\",\"doi\":\"10.1093/comnet/cnad013\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"\\n Neural network elements such as motif, backbone and influential nodes play important roles in neural network computation. Increasing researches have been applying complex network methods in order to identify different essential structures within complex neural networks. However, the distinct properties of synapses that build the neural network are often neglected, such as the difference between chemical synapses and electrical synapses. By separating these distinct synapses, we can identify a novel repertoire of neural motifs and greatly expand neural motif families in neural systems. Based on the expanded motif families, we further propose a novel neural-motif-based algorithm to extract the backbone in the neural network. The backbone circuit we extracted from Caenorhabditis elegans connectome controls an essential motor behaviour in C. elegans. Furthermore, we develop a novel neural-motif-based algorithm to identify influential neurons. Compared with the influential neurons identified using existing methods, the neurons identified in this work provide more information in related to their functions. These methods have been successfully applied to identify a series of network features in C. elegans, providing a biologically interpretable way of exploring the structure of neural network.\",\"PeriodicalId\":15442,\"journal\":{\"name\":\"Journal of complex networks\",\"volume\":\"283 1\",\"pages\":\"\"},\"PeriodicalIF\":2.2000,\"publicationDate\":\"2023-04-21\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of complex networks\",\"FirstCategoryId\":\"100\",\"ListUrlMain\":\"https://doi.org/10.1093/comnet/cnad013\",\"RegionNum\":4,\"RegionCategory\":\"数学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATHEMATICS, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of complex networks","FirstCategoryId":"100","ListUrlMain":"https://doi.org/10.1093/comnet/cnad013","RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATHEMATICS, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
Neuronal motifs reveal backbone structure and influential neurons of neural network in C. elegans
Neural network elements such as motif, backbone and influential nodes play important roles in neural network computation. Increasing researches have been applying complex network methods in order to identify different essential structures within complex neural networks. However, the distinct properties of synapses that build the neural network are often neglected, such as the difference between chemical synapses and electrical synapses. By separating these distinct synapses, we can identify a novel repertoire of neural motifs and greatly expand neural motif families in neural systems. Based on the expanded motif families, we further propose a novel neural-motif-based algorithm to extract the backbone in the neural network. The backbone circuit we extracted from Caenorhabditis elegans connectome controls an essential motor behaviour in C. elegans. Furthermore, we develop a novel neural-motif-based algorithm to identify influential neurons. Compared with the influential neurons identified using existing methods, the neurons identified in this work provide more information in related to their functions. These methods have been successfully applied to identify a series of network features in C. elegans, providing a biologically interpretable way of exploring the structure of neural network.
期刊介绍:
Journal of Complex Networks publishes original articles and reviews with a significant contribution to the analysis and understanding of complex networks and its applications in diverse fields. Complex networks are loosely defined as networks with nontrivial topology and dynamics, which appear as the skeletons of complex systems in the real-world. The journal covers everything from the basic mathematical, physical and computational principles needed for studying complex networks to their applications leading to predictive models in molecular, biological, ecological, informational, engineering, social, technological and other systems. It includes, but is not limited to, the following topics: - Mathematical and numerical analysis of networks - Network theory and computer sciences - Structural analysis of networks - Dynamics on networks - Physical models on networks - Networks and epidemiology - Social, socio-economic and political networks - Ecological networks - Technological and infrastructural networks - Brain and tissue networks - Biological and molecular networks - Spatial networks - Techno-social networks i.e. online social networks, social networking sites, social media - Other applications of networks - Evolving networks - Multilayer networks - Game theory on networks - Biomedicine related networks - Animal social networks - Climate networks - Cognitive, language and informational network