{"title":"Dcae-unet:基于半监督深度扩张卷积自编码器的改进u-net视盘分割模型","authors":"R. Shalini, V. Gopi","doi":"10.4015/s1016237223500254","DOIUrl":null,"url":null,"abstract":"An accurate assessment of the morphological characteristics of the Optic Disc (OD) is essential for the diagnosis of various retinal disorders. It is necessary to segment the OD precisely to detect structural OD changes associated with visual field loss. Although deep learning models are effective for this task, they require extensive labeled datasets, which can be time-consuming and costly. Furthermore, fundus images have multi-scale features, making segmentation challenging. In this study, we present a semi-supervised and transfer learning approach for OD segmentation. Our approach utilizes an im-proved Dilated Convolutional AutoEncoder (DCAE) and a pre-trained modified U-Net to segment the OD. The DCAE seg-ments the OD using feature similarity from unlabeled images in the Messidor dataset and saves the learned weights. Trans-fer learning is then applied to reuse the model weights in the U-Net, accelerating training on small datasets such as Drions-DB and Drishti-GS. The network architecture was modified by increasing the layers from 8 to 128 and halving the feature map length and width. To address the multi-scale challenge without inflating the model parameters, we introduce the Dilated Hierarchical Feature Extraction Module (DHFEM), a convolutional module capable of achieving multi-scale feature extraction without increasing model parameters. Additionally, DHFEM incorporates convolutional layers with varying recep-tive fields, further enhancing the network ability to extract features across multiple scales. Our OD segmentation method outperforms existing algorithms with reduced parameter quantities of 0.4 M. The mean Intersection over Union (mIoU) values are 0.9383 and 0.9629 and inference times of 45 ms and 40 ms for the Drions-DB and Drishti-GS datasets, respectively.","PeriodicalId":8862,"journal":{"name":"Biomedical Engineering: Applications, Basis and Communications","volume":"49 1","pages":""},"PeriodicalIF":0.6000,"publicationDate":"2023-08-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"DCAE-UNET: IMPROVED OPTIC DISC SEGMENTATION MODEL USING SEMI-SUPERVISED DEEP DILATED CONVOLUTION AUTOENCODER-BASED MODIFIED U-NET\",\"authors\":\"R. Shalini, V. Gopi\",\"doi\":\"10.4015/s1016237223500254\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"An accurate assessment of the morphological characteristics of the Optic Disc (OD) is essential for the diagnosis of various retinal disorders. It is necessary to segment the OD precisely to detect structural OD changes associated with visual field loss. Although deep learning models are effective for this task, they require extensive labeled datasets, which can be time-consuming and costly. Furthermore, fundus images have multi-scale features, making segmentation challenging. In this study, we present a semi-supervised and transfer learning approach for OD segmentation. Our approach utilizes an im-proved Dilated Convolutional AutoEncoder (DCAE) and a pre-trained modified U-Net to segment the OD. The DCAE seg-ments the OD using feature similarity from unlabeled images in the Messidor dataset and saves the learned weights. Trans-fer learning is then applied to reuse the model weights in the U-Net, accelerating training on small datasets such as Drions-DB and Drishti-GS. The network architecture was modified by increasing the layers from 8 to 128 and halving the feature map length and width. To address the multi-scale challenge without inflating the model parameters, we introduce the Dilated Hierarchical Feature Extraction Module (DHFEM), a convolutional module capable of achieving multi-scale feature extraction without increasing model parameters. Additionally, DHFEM incorporates convolutional layers with varying recep-tive fields, further enhancing the network ability to extract features across multiple scales. Our OD segmentation method outperforms existing algorithms with reduced parameter quantities of 0.4 M. The mean Intersection over Union (mIoU) values are 0.9383 and 0.9629 and inference times of 45 ms and 40 ms for the Drions-DB and Drishti-GS datasets, respectively.\",\"PeriodicalId\":8862,\"journal\":{\"name\":\"Biomedical Engineering: Applications, Basis and Communications\",\"volume\":\"49 1\",\"pages\":\"\"},\"PeriodicalIF\":0.6000,\"publicationDate\":\"2023-08-31\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biomedical Engineering: Applications, Basis and Communications\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.4015/s1016237223500254\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"ENGINEERING, BIOMEDICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biomedical Engineering: Applications, Basis and Communications","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.4015/s1016237223500254","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"ENGINEERING, BIOMEDICAL","Score":null,"Total":0}
DCAE-UNET: IMPROVED OPTIC DISC SEGMENTATION MODEL USING SEMI-SUPERVISED DEEP DILATED CONVOLUTION AUTOENCODER-BASED MODIFIED U-NET
An accurate assessment of the morphological characteristics of the Optic Disc (OD) is essential for the diagnosis of various retinal disorders. It is necessary to segment the OD precisely to detect structural OD changes associated with visual field loss. Although deep learning models are effective for this task, they require extensive labeled datasets, which can be time-consuming and costly. Furthermore, fundus images have multi-scale features, making segmentation challenging. In this study, we present a semi-supervised and transfer learning approach for OD segmentation. Our approach utilizes an im-proved Dilated Convolutional AutoEncoder (DCAE) and a pre-trained modified U-Net to segment the OD. The DCAE seg-ments the OD using feature similarity from unlabeled images in the Messidor dataset and saves the learned weights. Trans-fer learning is then applied to reuse the model weights in the U-Net, accelerating training on small datasets such as Drions-DB and Drishti-GS. The network architecture was modified by increasing the layers from 8 to 128 and halving the feature map length and width. To address the multi-scale challenge without inflating the model parameters, we introduce the Dilated Hierarchical Feature Extraction Module (DHFEM), a convolutional module capable of achieving multi-scale feature extraction without increasing model parameters. Additionally, DHFEM incorporates convolutional layers with varying recep-tive fields, further enhancing the network ability to extract features across multiple scales. Our OD segmentation method outperforms existing algorithms with reduced parameter quantities of 0.4 M. The mean Intersection over Union (mIoU) values are 0.9383 and 0.9629 and inference times of 45 ms and 40 ms for the Drions-DB and Drishti-GS datasets, respectively.
期刊介绍:
Biomedical Engineering: Applications, Basis and Communications is an international, interdisciplinary journal aiming at publishing up-to-date contributions on original clinical and basic research in the biomedical engineering. Research of biomedical engineering has grown tremendously in the past few decades. Meanwhile, several outstanding journals in the field have emerged, with different emphases and objectives. We hope this journal will serve as a new forum for both scientists and clinicians to share their ideas and the results of their studies.
Biomedical Engineering: Applications, Basis and Communications explores all facets of biomedical engineering, with emphasis on both the clinical and scientific aspects of the study. It covers the fields of bioelectronics, biomaterials, biomechanics, bioinformatics, nano-biological sciences and clinical engineering. The journal fulfils this aim by publishing regular research / clinical articles, short communications, technical notes and review papers. Papers from both basic research and clinical investigations will be considered.