香根草选择性靶向AKR1C1肺癌联合化疗的探索:生物信息学方法

Lucky Octavianus Saputra, Salsabila Yusfita Fawzy, Ratih Kurnia Wardani, E. Lukitaningsih
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引用次数: 0

摘要

活性氧(Reactive Oxygen Species, ROS)是一种致癌物质,肺癌就是其中之一。除了具有致癌性外,ROS还可以通过将其水平提高到细胞凋亡的阈值来杀死癌细胞本身。因此,有必要抑制某些在肺癌中高表达的抗氧化酶。其中之一是AKR1C1,它在细胞内ROS的根除中起作用。然而,AKR1C1与AKR1C2具有高度的结构相似性,因此它可以抑制治疗导致选择性问题。香根草具有潜在的抗癌作用。本研究旨在探索香根草作为选择性靶向AKR1C1的肺癌共化疗药物。采用的方法是蒸馏、气相色谱-质谱法鉴定香根草化合物,并通过生物信息学研究。用KNIME进行预测分析,确定试验化合物的活性。所有测试的香根草化合物对AKR1C1的预测值为1(活性),对AKR1C2的预测值为0(无活性)。通过GC-MS鉴定得到354个化合物。这些化合物用于过滤KNIME预测的化合物。分子对接结果表明,在10个香根草化合物中,有1个化合物与AKR1C1的结合最强,即- vetispirene化合物,S-score为-15.12 kcal/mol,比天然配体和阿司匹林强。基于上述研究数据,香根草中的-虫螺烯化合物可选择性靶向AKR1C1作为肺癌的潜在联合化疗药物。然而,需要进一步的研究来证明其对肺癌细胞的活性。关键词:活性氧,肺癌,AKR1C1,选择性,香根草。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The Exploration of Vetiver (Vetiveria zizanioides) as Co-Chemotherapy of Lung Cancer Selectively Targets AKR1C1: Bioinformatics Approach
Reactive Oxygen Species (ROS) is one of the cancer-causing agents, one of which is lung cancer. In addition to being carcinogenic, ROS can also be used to kill cancer cells themselves, by increasing their levels to the threshold of apoptosis. Therefore, it is necessary to inhibit certain antioxidant enzymes that are highly expressed in lung cancer. One of them is AKR1C1 which plays a role in the eradication of intracellular ROS. However, AKR1C1 has a high structural similarity to AKR1C2, so it can inhibit therapy causing selectivity problems. Vetiver (Vetiveria zizanioides) has potential as an anticancer. This study was conducted to explore vetiver as a co-chemotherapeutic agent for lung cancer targeting AKR1C1 selectively. The method used is distillation, identification of vetiver compounds using GC-MS, and through bioinformatics studies. Predictive analysis with KNIME was carried out to determine the activity of the test compound. All tested vetiver compounds had a predictive value of 1 (active) on AKR1C1 and 0 (inactive) on AKR1C2. Through GC-MS obtained 354 compounds were identified. These compounds are used to filter the compounds predicted by KNIME. The molecular docking results showed that of the 10 tested vetiver compounds, there was 1 compound that had the strongest bond in interacting with AKR1C1, namely beta vetispirene compound with an S-score of -15.12 kcal/mol, and stronger than native ligand and aspirin. Based on the research data, it can be concluded that the beta vetispirene compound in vetiver can be a potential co-chemotherapy agent for lung cancer in targeting AKR1C1 selectively. However, further research is needed to prove its activity on lung cancer cells.Keywords: ROS (Reactive Oxygen Species), Lung Cancer, AKR1C1, selectivity, vetiver (Vetiveria zizanioides).
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