气态组氨酸的构象行为和势能分布

Zahra Aliakbar Tehrani, Elham Tavasoli, Alireza Fattahi
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引用次数: 19

摘要

组氨酸作为一种天然氨基酸被发现具有重要的生物学意义,并被认为是一种亲核试剂或酶辅助因子,或在质子转移过程中发挥作用。气态芳香氨基酸组氨酸的性质取决于它在气相中可能采取的结构形式。采用从头算方法对组氨酸的气相构象/互变异构体进行了表征。在MM水平上对组氨酸的可能结构进行了广泛的调查,然后在B3LYP/6-311++G (d,p)水平上对独特构象的几何形状进行了细化。在这一理论水平上,确定了组氨酸互变异构体His [NπH]和His [NτH]的25个构象。MM能级不能很好地描述相对能量。在B3LYP/6-311++G (d,p)水平上的计算表明了显著的改进。本文报道了所有构象/互变异构体的从头算偶极矩。这些结果与先前的氨基酸研究结果进行了比较,并根据分子内氢键相互作用和纽曼预测进行了分析。此外,我们计算了最稳定结构的红外频率和强度,以协助分配氢键。进一步研究了组氨酸His [NπH]和His [NτH]互变异构体的25种构象的Ramachandran主势能面(PES)。用相同密度泛函理论B3LYP/6-311++G (d,p)研究了组氨酸不同构象/互变异构体势能分布的稳定点。详细探讨了组氨酸各种结构相互转化的能量路径的最小态和过渡态。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Conformational behavior and potential energy profile of gaseous histidine

Histidine as a natural amino acid is found to be biologically important and is known to function as a nucleophile or enzyme co-factor, or in proton transfer process. The properties of gaseous aromatic amino acid histidine depend on the structural forms it may take in gas-phase. Ab initio method has been used to characterize the gas-phase conformer/tautomers of histidine. Wide range of possible structures for histidine was surveyed at the MM level, and then the geometries of the unique conformers were refined at the B3LYP/6-311++G (d,p) levels.

At this theoretical level, 25 conformers were located for both tautomers of histidine i.e., His [NπH] and His [NτH]. The MM level provides a poor description of the relative energies. Calculations at the B3LYP/6-311++G (d,p) level represent a significant improvement. Ab initio dipole moments are reported for all the conformers/tautomers. The results are compared to previous studies of amino acids and are analyzed in terms of intramolecular hydrogen-bonding interactions and Newman projections. In addition, we calculated the infrared frequencies and intensities of the most stable structures in order to assist in the assignment of hydrogen-bonding. Furthermore, Ramachandran backbone potential energy surfaces (PES) of 25 conformers of His [NπH] and His [NτH] tautomers of histidine were considered.

The stationary points characterizing the potential energy profile of the various conformers/tautomers of histidine were investigated by the same density functional theory B3LYP/6-311++G (d,p). Minima and transition states characterizing the energetic paths for the interconversion of various structures of histidine were explored in detail.

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