突显支配 GH5_5 内-1,4-β-葡聚糖酶 RBcel1 的转糖基化的因素。

Zbornik Radova Pravnog Fakulteta u Splitu Pub Date : 2022-03-01 Epub Date: 2022-02-18 DOI:10.1107/S2059798321013541
Laetitia Collet, Corinne Vander Wauven, Yamina Oudjama, Moreno Galleni, Raphaël Dutoit
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引用次数: 0

摘要

转糖基化糖苷水解酶(GHs)为低聚糖的酶法合成提供了巨大的潜力。虽然相关知识在不断进步,但目前还没有提高转糖基化产量的独特策略。要获得利用 GHs 进行糖合成的高效酶法工具,仍有赖于对调节水解和转糖基化之间平衡的分子因素的进一步了解。RBcel1 是一种从未培殖细菌中分离出来的 GH5_5 亚家族的转糖基化酶,本研究对 RBcel1 的酶学和结构进行了研究,旨在揭示这些因素。研究发现,接受糖和供体糖的大小至关重要,因为转糖基化过程中,供体糖和接受糖的寡糖大小至少应分别为纤维四糖和纤维三糖。反应的 pH 值对水解和转糖基化之间的平衡起着重要的推动作用:当 pH 值低于 8 时,水解更有利,而当 pH 值为碱性时,转糖基化则成为主要反应。解决了两个 RBcel1 变体 RBcel1_E135Q 和 RBcel1_Y201F 与配体的复合结构,揭示了转糖基化背后的一些分子因素。RBcel1_E135Q 与纤维三糖复合物的结构使+3 子位点得以确定,这符合纤维三糖作为转糖基化受体的要求。RBcel1_Y201F 的结构是与几种转糖基化中间体一起获得的,为转糖基化提供了晶体学证据。催化裂隙中充满了(i)阴性亚位点中从纤维三糖到纤维六糖的供体,以及(ii)阳性亚位点中的纤维生物糖和纤维三糖。这种结构具有特别重要的意义,因为它是第一个与转糖基化产物复合的 GH5 酶的结构,其催化谷氨酸残基均未修改。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Highlighting the factors governing transglycosylation in the GH5_5 endo-1,4-β-glucanase RBcel1.

Highlighting the factors governing transglycosylation in the GH5_5 endo-1,4-β-glucanase RBcel1.

Highlighting the factors governing transglycosylation in the GH5_5 endo-1,4-β-glucanase RBcel1.

Highlighting the factors governing transglycosylation in the GH5_5 endo-1,4-β-glucanase RBcel1.

Transglycosylating glycoside hydrolases (GHs) offer great potential for the enzymatic synthesis of oligosaccharides. Although knowledge is progressing, there is no unique strategy to improve the transglycosylation yield. Obtaining efficient enzymatic tools for glycan synthesis with GHs remains dependent on an improved understanding of the molecular factors governing the balance between hydrolysis and transglycosylation. This enzymatic and structural study of RBcel1, a transglycosylase from the GH5_5 subfamily isolated from an uncultured bacterium, aims to unravel such factors. The size of the acceptor and donor sugars was found to be critical since transglycosylation is efficient with oligosaccharides at least the size of cellotetraose as the donor and cellotriose as the acceptor. The reaction pH is important in driving the balance between hydrolysis and transglycosylation: hydrolysis is favored at pH values below 8, while transglycosylation becomes the major reaction at basic pH. Solving the structures of two RBcel1 variants, RBcel1_E135Q and RBcel1_Y201F, in complex with ligands has brought to light some of the molecular factors behind transglycosylation. The structure of RBcel1_E135Q in complex with cellotriose allowed a +3 subsite to be defined, in accordance with the requirement for cellotriose as a transglycosylation acceptor. The structure of RBcel1_Y201F has been obtained with several transglycosylation intermediates, providing crystallographic evidence of transglycosylation. The catalytic cleft is filled with (i) donors ranging from cellotriose to cellohexaose in the negative subsites and (ii) cellobiose and cellotriose in the positive subsites. Such a structure is particularly relevant since it is the first structure of a GH5 enzyme in complex with transglycosylation products that has been obtained with neither of the catalytic glutamate residues modified.

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