基于伪极坐标采样和GPU加速的在线动态磁共振成像

Qiushi Meng, Zhaoyang Jin
{"title":"基于伪极坐标采样和GPU加速的在线动态磁共振成像","authors":"Qiushi Meng, Zhaoyang Jin","doi":"10.1109/CISP-BMEI.2017.8302180","DOIUrl":null,"url":null,"abstract":"Most of the online dynamic magnetic resonance imaging (dMRI) techniques are developed based on Cartesian trajectories. Recently, radial trajectories have been proposed to acquire image data for online dMRI. Compared with Cartesian trajectories, radial trajectories cover densely at k-space center and are more incoherent. When using compressed sensing technique to reconstruct dynamic images with under-sampling radial k-space data, the regridding procedure is employed, however it is usually time consuming and introduces numerical errors. In this study, a novel radial-like pseudo-polar (PP) trajectory was used for online dMRI. PP trajectory can avoid regridding and inverse-regridding operation by using a pseudopolar FFT (PPFFT) operation without interpolation. In the reconstructiongraphics processing unit (GPU) is used to further decrease the reconstruction time and achieve real-time online effect. In this simulation study, cardiac k-space dataset was fully acquired and using as a reference dataset. The PP trajectory was used to retrospectively under-sample k-space data with 12.5% and 25% coverage. The reconstruction results show that, the image quality of online dMRI based on PP under-sampling is higher than that of radial under-sampling based method. The reconstruction time was significantly shorten by using GPU acceleration, for the tested case, it is more than 20 times faster than the CPU computing.","PeriodicalId":6474,"journal":{"name":"2017 10th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI)","volume":"137 1","pages":"1-5"},"PeriodicalIF":0.0000,"publicationDate":"2017-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"1","resultStr":"{\"title\":\"Online dynamic magnetic resonance imaging based on pseudo-polar sampling and GPU acceleration\",\"authors\":\"Qiushi Meng, Zhaoyang Jin\",\"doi\":\"10.1109/CISP-BMEI.2017.8302180\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Most of the online dynamic magnetic resonance imaging (dMRI) techniques are developed based on Cartesian trajectories. Recently, radial trajectories have been proposed to acquire image data for online dMRI. Compared with Cartesian trajectories, radial trajectories cover densely at k-space center and are more incoherent. When using compressed sensing technique to reconstruct dynamic images with under-sampling radial k-space data, the regridding procedure is employed, however it is usually time consuming and introduces numerical errors. In this study, a novel radial-like pseudo-polar (PP) trajectory was used for online dMRI. PP trajectory can avoid regridding and inverse-regridding operation by using a pseudopolar FFT (PPFFT) operation without interpolation. In the reconstructiongraphics processing unit (GPU) is used to further decrease the reconstruction time and achieve real-time online effect. In this simulation study, cardiac k-space dataset was fully acquired and using as a reference dataset. The PP trajectory was used to retrospectively under-sample k-space data with 12.5% and 25% coverage. The reconstruction results show that, the image quality of online dMRI based on PP under-sampling is higher than that of radial under-sampling based method. The reconstruction time was significantly shorten by using GPU acceleration, for the tested case, it is more than 20 times faster than the CPU computing.\",\"PeriodicalId\":6474,\"journal\":{\"name\":\"2017 10th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI)\",\"volume\":\"137 1\",\"pages\":\"1-5\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2017-10-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"1\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2017 10th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/CISP-BMEI.2017.8302180\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2017 10th International Congress on Image and Signal Processing, BioMedical Engineering and Informatics (CISP-BMEI)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/CISP-BMEI.2017.8302180","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 1

摘要

大多数在线动态磁共振成像(dMRI)技术都是基于笛卡尔轨迹开发的。最近,径向轨迹被提出用于在线dMRI获取图像数据。与笛卡儿轨迹相比,径向轨迹在k空间中心覆盖密集,不相干性更强。当使用压缩感知技术重建欠采样径向k空间数据的动态图像时,采用了重网格过程,但它通常耗时且引入数值误差。在这项研究中,一种新的放射状伪极(PP)轨迹被用于在线dMRI。PP轨迹采用不加插值的伪极FFT (PPFFT)运算,避免了重格和反重格操作。在重建中,采用图形处理器(GPU)进一步缩短了重建时间,达到了实时在线的效果。在本仿真研究中,充分获取了心脏k空间数据集,并将其作为参考数据集。PP轨迹用于回顾性样本下k空间数据,覆盖率分别为12.5%和25%。重建结果表明,基于PP欠采样的在线dMRI图像质量高于基于径向欠采样的在线dMRI图像质量。使用GPU加速后,重构时间明显缩短,对于测试用例,重构速度比CPU计算快20倍以上。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Online dynamic magnetic resonance imaging based on pseudo-polar sampling and GPU acceleration
Most of the online dynamic magnetic resonance imaging (dMRI) techniques are developed based on Cartesian trajectories. Recently, radial trajectories have been proposed to acquire image data for online dMRI. Compared with Cartesian trajectories, radial trajectories cover densely at k-space center and are more incoherent. When using compressed sensing technique to reconstruct dynamic images with under-sampling radial k-space data, the regridding procedure is employed, however it is usually time consuming and introduces numerical errors. In this study, a novel radial-like pseudo-polar (PP) trajectory was used for online dMRI. PP trajectory can avoid regridding and inverse-regridding operation by using a pseudopolar FFT (PPFFT) operation without interpolation. In the reconstructiongraphics processing unit (GPU) is used to further decrease the reconstruction time and achieve real-time online effect. In this simulation study, cardiac k-space dataset was fully acquired and using as a reference dataset. The PP trajectory was used to retrospectively under-sample k-space data with 12.5% and 25% coverage. The reconstruction results show that, the image quality of online dMRI based on PP under-sampling is higher than that of radial under-sampling based method. The reconstruction time was significantly shorten by using GPU acceleration, for the tested case, it is more than 20 times faster than the CPU computing.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信