ATP结合盒(ABC)转运蛋白在癌症中的作用:评估预后、预测免疫力和指导治疗。

Channels (Austin, Tex.) Pub Date : 2023-12-01 Epub Date: 2023-10-31 DOI:10.1080/19336950.2023.2273247
Yuan Yuan, Zhouhong Xiang, Yuhua Xia, Jiaheng Xie, Xiudi Jiang, Zhicheng Lu
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引用次数: 0

摘要

癌症是目前世界上最常见的癌症。然而,我们对肿瘤微环境及其相关代谢特征的理解仍然有限。ATP结合盒(ABC)转运蛋白是生物体中主要的跨膜转运蛋白。因此,研究ABC转运蛋白在癌症中的作用至关重要。癌症患者的转录组数据从TCGA数据库下载。ABC转运蛋白相关基因从Genecards数据库中获得。通过LASSO回归,构建了癌症ABC相关的预后标志。随后,进行免疫微环境分析。最后,进行细胞实验以验证ABCB7在乳腺癌症细胞系MDA-MB-231和MCF-7中的功能。使用ABC转运蛋白相关信号,我们计算了每个癌症患者的风险评分。癌症患者随后被分为高风险组和低风险组,以中位风险评分为阈值。值得注意的是,高危组患者的预后明显较差(P
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The role of ATP binding cassette (ABC) transporters in breast cancer: Evaluating prognosis, predicting immunity, and guiding treatment.

Breast cancer is currently the most prevalent form of cancer worldwide. Nevertheless, there remains limited clarity regarding our understanding of the tumor microenvironment and metabolic characteristics associated with it. ATP-binding cassette (ABC) transporters are the predominant transmembrane transporters found in organisms. Therefore, it is essential to investigate the role of ABC transporters in breast cancer. Transcriptome data from breast cancer patients were downloaded from the TCGA database. ABC transporter-related genes were obtained from the Genecards database. By LASSO regression, ABC-associated prognostic signature was constructed in breast cancer. Subsequently, immune microenvironment analysis was performed. Finally, cell experiments were performed to verify the function of ABCB7 in the breast cancer cell lines MDA-MB-231 and MCF-7. Using the ABC transporter-associated signature, we calculated a risk score for each breast cancer patient. Patients with breast cancer were subsequently categorized into high-risk and low-risk groups, utilizing the median risk score as the threshold. Notably, patients in the high-risk group exhibited significantly worse prognosis (P<0.05). Additionally, differences were observed in terms of immune cell infiltration levels, immune correlations, and gene expression of immune checkpoints between the two groups. Functional experiments conducted on breast cancer cell lines MDA-MB-231 and MCF-7 demonstrated that ABCB7 knockdown significantly diminished cell activity, proliferation, invasion, and migration. These findings emphasize the significance of understanding ABC transporter-mediated metabolic and transport characteristics in breast cancer, offering promising directions for further research and potential therapeutic interventions.

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