{"title":"应用方法来推断真菌之间的系统发育关系","authors":"A. Dissanayake","doi":"10.5943/MYCOSPHERE/11/1/18","DOIUrl":null,"url":null,"abstract":"There is a need to document the methodologies used for molecular phylogenetic analyses since the current fungal identification, classification and phylogeny are necessarily applied with DNA molecular sequence data. Hence this manuscript is mainly aimed to provide a basic reference or guideline for the mycologists venturing into the field of phylogenetic studies and to avoid unnecessary repetitions in related publications. This is not at all to elaborate the theoretical background but is intended as a compact guide of some useful software references and coding for the most commonly used phylogenetic methods applied in mycological research. This reference manuscript is originally conceived for usage with a set of programs necessary for inference of phylogenetic analyses in fungal research (taxonomy and phylogeny). For this purpose, principles, introductory texts and formulas have been omitted. Meanwhile, necessary steps from DNA extraction to DNA sequencing, sequences quality check, data alignment and general steps of phylogenetic tree reconstructions have been included.","PeriodicalId":48718,"journal":{"name":"Mycosphere","volume":null,"pages":null},"PeriodicalIF":10.0000,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"84","resultStr":"{\"title\":\"Applied aspects of methods to infer phylogenetic relationships amongst fungi\",\"authors\":\"A. Dissanayake\",\"doi\":\"10.5943/MYCOSPHERE/11/1/18\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"There is a need to document the methodologies used for molecular phylogenetic analyses since the current fungal identification, classification and phylogeny are necessarily applied with DNA molecular sequence data. Hence this manuscript is mainly aimed to provide a basic reference or guideline for the mycologists venturing into the field of phylogenetic studies and to avoid unnecessary repetitions in related publications. This is not at all to elaborate the theoretical background but is intended as a compact guide of some useful software references and coding for the most commonly used phylogenetic methods applied in mycological research. This reference manuscript is originally conceived for usage with a set of programs necessary for inference of phylogenetic analyses in fungal research (taxonomy and phylogeny). For this purpose, principles, introductory texts and formulas have been omitted. Meanwhile, necessary steps from DNA extraction to DNA sequencing, sequences quality check, data alignment and general steps of phylogenetic tree reconstructions have been included.\",\"PeriodicalId\":48718,\"journal\":{\"name\":\"Mycosphere\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":10.0000,\"publicationDate\":\"2020-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"84\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Mycosphere\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.5943/MYCOSPHERE/11/1/18\",\"RegionNum\":1,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MYCOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mycosphere","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.5943/MYCOSPHERE/11/1/18","RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MYCOLOGY","Score":null,"Total":0}
Applied aspects of methods to infer phylogenetic relationships amongst fungi
There is a need to document the methodologies used for molecular phylogenetic analyses since the current fungal identification, classification and phylogeny are necessarily applied with DNA molecular sequence data. Hence this manuscript is mainly aimed to provide a basic reference or guideline for the mycologists venturing into the field of phylogenetic studies and to avoid unnecessary repetitions in related publications. This is not at all to elaborate the theoretical background but is intended as a compact guide of some useful software references and coding for the most commonly used phylogenetic methods applied in mycological research. This reference manuscript is originally conceived for usage with a set of programs necessary for inference of phylogenetic analyses in fungal research (taxonomy and phylogeny). For this purpose, principles, introductory texts and formulas have been omitted. Meanwhile, necessary steps from DNA extraction to DNA sequencing, sequences quality check, data alignment and general steps of phylogenetic tree reconstructions have been included.
期刊介绍:
Mycosphere stands as an international, peer-reviewed journal committed to the rapid dissemination of high-quality papers on fungal biology. Embracing an open-access approach, Mycosphere serves as a dedicated platform for the mycology community, ensuring swift publication of their valuable contributions. All submitted manuscripts undergo a thorough peer-review process before acceptance, with authors retaining copyright.
Key highlights of Mycosphere's publication include:
- Peer-reviewed manuscripts and monographs
- Open access, fostering accessibility and dissemination of knowledge
- Swift turnaround, facilitating timely sharing of research findings
- For information regarding open access charges, refer to the instructions for authors
- Special volumes, offering a platform for thematic collections and focused contributions.
Mycosphere is dedicated to promoting the accessibility and advancement of fungal biology through its inclusive and efficient publishing process.