佛罗里达湿地松个体树木死亡率模型:一种混合建模方法

N. Timilsina, C. Staudhammer
{"title":"佛罗里达湿地松个体树木死亡率模型:一种混合建模方法","authors":"N. Timilsina, C. Staudhammer","doi":"10.5849/SJAF.11-026","DOIUrl":null,"url":null,"abstract":"Tree mortality is an important biological process and should be incorporated in forest growth simulation models to improve their accuracy and biological authenticity. We developed individual tree mortality models for slash pine using data from north central Florida. We first fit mortality models with only fixed effects using a logistic model and then added a random effect to account for the multilevel nature of the data. We used a generalized linear mixed modeling (GLMM) framework to compare the outcomes of the two fitting processes. Predictions from both models were evaluated using receiver operating characteristics (ROC) curves. Area under the ROC curve was higher for predictions from the GLMM compared with the fixed effects logistic model. Subject-specific responses (including plot-level random effects in the model of individual trees) from the GLMM were better at predicting mortality. Similar results were obtained after performing a cross-validation of the models. Although the fixed effects accounted for regular mortality because of suppression and competition for resources, the plot-level random effect accounted for the effects of other unmeasured plot-level variables. In our models, dbh, height, competition, site index, and basal area per hectare were significant predictors.","PeriodicalId":51154,"journal":{"name":"Southern Journal of Applied Forestry","volume":"36 1","pages":"211-219"},"PeriodicalIF":0.0000,"publicationDate":"2012-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.5849/SJAF.11-026","citationCount":"5","resultStr":"{\"title\":\"Individual Tree Mortality Model for Slash Pine in Florida: A Mixed Modeling Approach\",\"authors\":\"N. Timilsina, C. Staudhammer\",\"doi\":\"10.5849/SJAF.11-026\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Tree mortality is an important biological process and should be incorporated in forest growth simulation models to improve their accuracy and biological authenticity. We developed individual tree mortality models for slash pine using data from north central Florida. We first fit mortality models with only fixed effects using a logistic model and then added a random effect to account for the multilevel nature of the data. We used a generalized linear mixed modeling (GLMM) framework to compare the outcomes of the two fitting processes. Predictions from both models were evaluated using receiver operating characteristics (ROC) curves. Area under the ROC curve was higher for predictions from the GLMM compared with the fixed effects logistic model. Subject-specific responses (including plot-level random effects in the model of individual trees) from the GLMM were better at predicting mortality. Similar results were obtained after performing a cross-validation of the models. Although the fixed effects accounted for regular mortality because of suppression and competition for resources, the plot-level random effect accounted for the effects of other unmeasured plot-level variables. In our models, dbh, height, competition, site index, and basal area per hectare were significant predictors.\",\"PeriodicalId\":51154,\"journal\":{\"name\":\"Southern Journal of Applied Forestry\",\"volume\":\"36 1\",\"pages\":\"211-219\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2012-11-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.5849/SJAF.11-026\",\"citationCount\":\"5\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Southern Journal of Applied Forestry\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.5849/SJAF.11-026\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Southern Journal of Applied Forestry","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.5849/SJAF.11-026","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 5

摘要

树木死亡是一个重要的生物学过程,应纳入森林生长模拟模型,以提高其准确性和生物学真实性。我们利用佛罗里达中北部的数据开发了湿地松的个体树木死亡率模型。我们首先使用逻辑模型拟合只有固定效应的死亡率模型,然后添加随机效应来解释数据的多层次性质。我们使用广义线性混合建模(GLMM)框架来比较两个拟合过程的结果。采用受试者工作特征(ROC)曲线对两种模型的预测结果进行评估。与固定效应logistic模型相比,GLMM预测的ROC曲线下面积更高。来自GLMM的受试者特异性反应(包括单个树模型中的plot-level随机效应)在预测死亡率方面更好。在对模型进行交叉验证后,得到了类似的结果。虽然固定效应解释了由于资源抑制和竞争而导致的规律死亡率,但情节水平随机效应解释了其他未测量的情节水平变量的影响。在我们的模型中,胸径、高度、竞争、立地指数和每公顷基础面积是显著的预测因子。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Individual Tree Mortality Model for Slash Pine in Florida: A Mixed Modeling Approach
Tree mortality is an important biological process and should be incorporated in forest growth simulation models to improve their accuracy and biological authenticity. We developed individual tree mortality models for slash pine using data from north central Florida. We first fit mortality models with only fixed effects using a logistic model and then added a random effect to account for the multilevel nature of the data. We used a generalized linear mixed modeling (GLMM) framework to compare the outcomes of the two fitting processes. Predictions from both models were evaluated using receiver operating characteristics (ROC) curves. Area under the ROC curve was higher for predictions from the GLMM compared with the fixed effects logistic model. Subject-specific responses (including plot-level random effects in the model of individual trees) from the GLMM were better at predicting mortality. Similar results were obtained after performing a cross-validation of the models. Although the fixed effects accounted for regular mortality because of suppression and competition for resources, the plot-level random effect accounted for the effects of other unmeasured plot-level variables. In our models, dbh, height, competition, site index, and basal area per hectare were significant predictors.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
审稿时长
>36 weeks
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信