S. K. Thakur, Shreya C. Pal, Ankur Kumar, R. Goel, S. Eswaran
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Our earlier work has shown that aryl azides in this series lead to ‘long lived’ transients allowing for increased intermolecular reaction rates, otherwise difficult to achieve. Using this crosslinker, successful crosslinking of αA-Crystallin & lysozyme has been demonstrated in two steps i. e. incubation followed by photolysis (366 nm, 6W UV lamp). Previous studies on αACrystallin have mostly used only homobifunctional crosslinkers. As hypothesized by us, the use of a heterobifunctional crosslinker has indeed led to more efficient crosslinking. This has been confirmed using SDS-PAGE, ESI-MS/MS (following trypsinization of the homo and hetero ‘dimer’ bands) and use of StavroX 3.6.0.1, the bioinformatics software especially suited for analyzing intermolecular crosslinking. 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引用次数: 2
摘要
本文介绍了一种新型小芳基叠氮基- n -羟基琥珀酰亚胺基杂双功能交联剂用于α结晶素与溶菌酶的交联。交联剂是基于小分子,3-羟基邻氨基苯酸(3HAA)的一部分,在色氨酸代谢的犬尿氨酸途径。在人体疾病状态下,发现3HAA含量增加。新的交联剂含有一个光不稳定的叠氮基团和一个胺反应性的n -羟基琥珀酰亚胺(NHS)基团。小的交联剂能更好地捕获相互作用的蛋白质界面,而大的交联剂更有助于识别相互作用的伙伴。我们早期的工作表明,这一系列的芳基叠氮化物导致了“长寿命”的瞬态,从而增加了分子间反应速率,否则很难实现。使用该交联剂,α - a -晶体蛋白与溶菌酶的成功交联已被证明在两个步骤,即孵育和光解(366nm, 6W紫外灯)。以往对α - acystallin的研究大多只使用同源双功能交联剂。正如我们假设的那样,使用异双功能交联剂确实导致了更有效的交联。这已经通过SDS-PAGE、ESI-MS/MS(对同源和异源二聚体进行蛋白酶化处理)和StavroX 3.6.0.1(特别适合分析分子间交联的生物信息学软件)得到证实。这些研究将有助于更好地理解α - a -晶体蛋白在伴随机制和白内障发生中的作用。
“ESI-MSBioinformatics Studies on Crosslinking of αA-Crystallin and Lysozyme using a New Small Aryl Azido-N-HydroxySuccinimidyl Heterobifunctional Crosslinker based on a Metabolite of the Alternative Kynurenine Pathway”.
The use of a new small aryl azido-N-Hydroxysuccinimidyl heterobifunctional crosslinker for crosslinking of αAcrystallin and lysozyme is described here. The crosslinker is based on the small molecule, 3-hydroxy anthranilic acid (3HAA) a part of the kynurenine pathway in Tryptophan metabolism. Enhanced amounts of 3HAA are found in disease states in the human body. The new crosslinker contains a photo labile azido group and an amine reactive, N-hydroxy succinimide (NHS) group. Small crosslinkers capture interacting protein interfaces better, while the larger ones are more useful for identifying interacting partners. Our earlier work has shown that aryl azides in this series lead to ‘long lived’ transients allowing for increased intermolecular reaction rates, otherwise difficult to achieve. Using this crosslinker, successful crosslinking of αA-Crystallin & lysozyme has been demonstrated in two steps i. e. incubation followed by photolysis (366 nm, 6W UV lamp). Previous studies on αACrystallin have mostly used only homobifunctional crosslinkers. As hypothesized by us, the use of a heterobifunctional crosslinker has indeed led to more efficient crosslinking. This has been confirmed using SDS-PAGE, ESI-MS/MS (following trypsinization of the homo and hetero ‘dimer’ bands) and use of StavroX 3.6.0.1, the bioinformatics software especially suited for analyzing intermolecular crosslinking. These investigations are expected to lead to a better understanding of the role of αA-Crystallin in chaperoning mechanism and in cataractogenesis.