鹿角羚数据协调中心,一个用于评估基因性能的开放存取数据库

IF 1.5 4区 地球科学 Q3 MARINE & FRESHWATER BIOLOGY
Patrick M. Kiel, N. Formel, M. Jankulak, A. Baker, R. Cunning, D. Gilliam, C. Kenkel, C. Langdon, D. Lirman, C. Lustic, K. Maxwell, A. Moulding, A. Moura, E. Muller, S. Schopmeyer, R. S. Winters, I. Enochs
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引用次数: 0

摘要

颈角Acropora cervicornis曾经是该地区主要的造礁珊瑚之一,现在是佛罗里达州和西加勒比地区珊瑚恢复工作的重点物种。科学家和修复从业者已经独立收集了在修复苗圃中生长的颈角蠓基因的表型数据。虽然这些数据对于了解种内对不同环境条件的反应以及潜在的遗传对表型变异的贡献非常重要,但孤立地说,这些观察对越来越有必要的大规模、多机构恢复工作的应用有限。在这里,我们提出鹿角羚数据协调中心,一个网络访问的关系数据库,以对齐不同的数据集,比较特定基因的性能。在这个数据描述符中,我们发布了248个基因的数据,评估了38个不同的性状。我们提出了一个框架,使数据集与促进整个加勒比地区知情、数据驱动的恢复目标保持一致。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Acropora cervicornis Data Coordination Hub, an open access database for evaluating genet performance
Once one of the predominant reef-building corals in the region, Acropora cervicornis is now a focal species of coral restoration efforts in Florida and the western Caribbean. Scientists and restoration practitioners have been independently collecting phenotypic data on genets of A. cervicornis grown in restoration nurseries. While these data are important for understanding the intraspecific response to varying environmental conditions, and thus the potential genetic contribution to phenotypic variation, in isolation these observations are of limited use for large-scale, multi-institution restoration efforts that are becoming increasingly necessary. Here, we present the Acropora cervicornis Data Coordination Hub, a web-accessible relational database to align disparate datasets to compare genet-specific performance. In this data descriptor, we release data for 248 genets evaluated across 38 separate traits. We present a framework to align datasets with the goal of facilitating informed, data-driven restoration throughout the Caribbean.
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来源期刊
Bulletin of Marine Science
Bulletin of Marine Science 地学-海洋学
CiteScore
2.90
自引率
6.70%
发文量
25
审稿时长
6-12 weeks
期刊介绍: The Bulletin of Marine Science is a hybrid open access journal dedicated to the dissemination of research dealing with the waters of the world’s oceans. All aspects of marine science are treated by the Bulletin of Marine Science, including papers in marine biology, biological oceanography, fisheries, marine policy, applied marine physics, marine geology and geophysics, marine and atmospheric chemistry, meteorology, and physical oceanography. In most regular issues the Bulletin features separate sections on new taxa, coral reefs, and novel research gear, instrument, device, or system with potential to advance marine research (“Research Tools in Marine Science”). Additionally, the Bulletin publishes informative stand-alone artwork with accompany text in its section "Portraits of Marine Science."
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