{"title":"基于核糖体内转录间隔序列和叶绿体trl - f序列的穿心莲科系统发育研究","authors":"E. Skendzic, J. Columbus, R. Cerros-Tlatilpa","doi":"10.5642/ALISO.20072301.40","DOIUrl":null,"url":null,"abstract":"Phylogenetic relationships among 85 species representing 35 genera in the grass tribe Andropogoneae were estimated from maximum parsimony and Bayesian analyses of nuclear ITS and chloroplast trnL-F DNA sequences. Ten of the 11 subtribes recognized by Clayton and Renvoize (1986) were sampled. Independent analyses of ITS and trnL-F yielded mostly congruent, though not well resolved, topologies. Arundinella is sister to Andropogoneae in the trnL-F phylogeny and is nested within the tribe in the ITS and combined data trees. Tristachya is sister to Andropogoneae + Arundinella in the ITS phylogeny. Four clades are common to the ITS and trnL-F phylogenies and the trees from the combined data set. Clade A consists of Andrapogon, Diectomis, Hyparrhenia, Hyperthelia, and Schizachyrium. Within this clade, Andropogon distachyos, Hyparrhenia, and Hyperthelia form clade C. Clade B consists of Bothriochloa, Capillipedium, and Dichanthium, and clade D includes Chrysopogon and Vetiveria. Analysis of the combined data resulted in an unsupported larger clade comprising clades A and B plus Cymbopogon, and a sister clade of Heteropogon, Iseilema, and Themedu. This larger clade is similar to the core Andropogoneae clade previously reported (Spangler et al. 1999; Mathews et al. 2002). Based on our sample, which represents 41% of the tribe's genera, most of Clayton and Renvoize's (1986) subtribes are not monophyletic.","PeriodicalId":80410,"journal":{"name":"Aliso","volume":"23 1","pages":"530-544"},"PeriodicalIF":0.0000,"publicationDate":"2007-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"44","resultStr":"{\"title\":\"PHYLOGENETICS OF ANDROPOGONEAE (POACEAE: PANICOIDEAE) BASED ON NUCLEAR RIBOSOMAL INTERNAL TRANSCRIBED SPACER AND CHLOROPLAST trnL-F SEQUENCES\",\"authors\":\"E. Skendzic, J. Columbus, R. Cerros-Tlatilpa\",\"doi\":\"10.5642/ALISO.20072301.40\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Phylogenetic relationships among 85 species representing 35 genera in the grass tribe Andropogoneae were estimated from maximum parsimony and Bayesian analyses of nuclear ITS and chloroplast trnL-F DNA sequences. Ten of the 11 subtribes recognized by Clayton and Renvoize (1986) were sampled. Independent analyses of ITS and trnL-F yielded mostly congruent, though not well resolved, topologies. Arundinella is sister to Andropogoneae in the trnL-F phylogeny and is nested within the tribe in the ITS and combined data trees. Tristachya is sister to Andropogoneae + Arundinella in the ITS phylogeny. Four clades are common to the ITS and trnL-F phylogenies and the trees from the combined data set. Clade A consists of Andrapogon, Diectomis, Hyparrhenia, Hyperthelia, and Schizachyrium. Within this clade, Andropogon distachyos, Hyparrhenia, and Hyperthelia form clade C. Clade B consists of Bothriochloa, Capillipedium, and Dichanthium, and clade D includes Chrysopogon and Vetiveria. Analysis of the combined data resulted in an unsupported larger clade comprising clades A and B plus Cymbopogon, and a sister clade of Heteropogon, Iseilema, and Themedu. This larger clade is similar to the core Andropogoneae clade previously reported (Spangler et al. 1999; Mathews et al. 2002). Based on our sample, which represents 41% of the tribe's genera, most of Clayton and Renvoize's (1986) subtribes are not monophyletic.\",\"PeriodicalId\":80410,\"journal\":{\"name\":\"Aliso\",\"volume\":\"23 1\",\"pages\":\"530-544\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2007-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"44\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Aliso\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.5642/ALISO.20072301.40\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Aliso","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.5642/ALISO.20072301.40","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 44
摘要
利用核ITS和叶绿体trnL-F DNA序列的最大简约性和贝叶斯分析,估计了草族andropogonae 35属85种的系统发育关系。Clayton和Renvoize(1986)确认的11个亚部落中有10个被取样。ITS和trnL-F的独立分析产生了大部分一致的拓扑,尽管没有很好地解决。在trnL-F系统发育中,Arundinella是Andropogoneae的姐妹,并且在ITS和组合数据树中嵌套在部落中。在ITS系统发育中,Tristachya是Andropogoneae + Arundinella的姐妹。ITS和trnL-F系统发育和组合数据集的树共有四个分支。进化支系A由雌雄同体、雌雄同体、雌雄同体、雌雄同体、雌雄同体和雌雄同体组成。在这一支系中,长尾男人猿、长尾猿和长尾猿形成了c支系。B支系包括Bothriochloa、Capillipedium和Dichanthium, D支系包括Chrysopogon和Vetiveria。对综合数据的分析得出了一个不受支持的更大的分支,包括分支A和B加上Cymbopogon,以及Heteropogon, Iseilema和Themedu的姐妹分支。这个较大的分支类似于先前报道的androgoneae核心分支(Spangler et al. 1999;Mathews et al. 2002)。根据我们的样本,这代表了41%的部落属,大多数Clayton和Renvoize(1986)的亚部落不是单系的。
PHYLOGENETICS OF ANDROPOGONEAE (POACEAE: PANICOIDEAE) BASED ON NUCLEAR RIBOSOMAL INTERNAL TRANSCRIBED SPACER AND CHLOROPLAST trnL-F SEQUENCES
Phylogenetic relationships among 85 species representing 35 genera in the grass tribe Andropogoneae were estimated from maximum parsimony and Bayesian analyses of nuclear ITS and chloroplast trnL-F DNA sequences. Ten of the 11 subtribes recognized by Clayton and Renvoize (1986) were sampled. Independent analyses of ITS and trnL-F yielded mostly congruent, though not well resolved, topologies. Arundinella is sister to Andropogoneae in the trnL-F phylogeny and is nested within the tribe in the ITS and combined data trees. Tristachya is sister to Andropogoneae + Arundinella in the ITS phylogeny. Four clades are common to the ITS and trnL-F phylogenies and the trees from the combined data set. Clade A consists of Andrapogon, Diectomis, Hyparrhenia, Hyperthelia, and Schizachyrium. Within this clade, Andropogon distachyos, Hyparrhenia, and Hyperthelia form clade C. Clade B consists of Bothriochloa, Capillipedium, and Dichanthium, and clade D includes Chrysopogon and Vetiveria. Analysis of the combined data resulted in an unsupported larger clade comprising clades A and B plus Cymbopogon, and a sister clade of Heteropogon, Iseilema, and Themedu. This larger clade is similar to the core Andropogoneae clade previously reported (Spangler et al. 1999; Mathews et al. 2002). Based on our sample, which represents 41% of the tribe's genera, most of Clayton and Renvoize's (1986) subtribes are not monophyletic.