产生SARS-CoV-2 ORF1ab蛋白的RNA基因组2中光滑序列UUUAAAC的出现

H. Geurdes
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引用次数: 0

摘要

在本简短的报告中,我们研究了SARS-CoV-2的ORF1ab蛋白的光滑序列TTTAAAC (cDNA格式)。我们发现了许多TTTAAAC序列,其中只有一个是主动产生移位-1。还有另外三个序列与前面提到的完全一样位于mRNA的读透中。它们不会产生a-1移码。另外还有一个位置出现伪结,但没有移码。我们想知道是否有可能强制或阻止TTTAAAC的转移来破坏ORF1ab衍生的蛋白质,如RNA依赖性RNA聚合酶和/或2 ' - o -核糖甲基转移酶。最后提出了一种单一有效移码的mRNA聚合物阻遏物,用于进一步研究药物治疗。也许存在特定的蛋白质抑制因子。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Occurrence of the Slippery Sequence UUUAAAC in the RNA Genome 2 that generates the ORF1ab Protein of SARS-CoV-2
In the present brief report we look into the slippery sequence TTTAAAC (in cDNA format) of the ORF1ab protein of SARS-CoV-2. We found a number of TTTAAAC sequences where only one is actively producing a shift-1. There are three other sequences exactly positioned in the read-through of mRNA as the aforementioned. They do not produce a-1 frameshift. There is one position where in addition a pseudoknot occurs but no frameshift. We ask if it is possible to enforce or prevent shifts in TTTAAAC to destroy the ORF1ab derived proteins such as RNA-dependent RNA polymerase and/or 2’-O-ribose methyltransferase. Finally an mRNA polymer repressor of the one single effective frameshift is proposed for further research into a medicinal treatment. Perhaps that there are specific protein repressors.
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