{"title":"产生SARS-CoV-2 ORF1ab蛋白的RNA基因组2中光滑序列UUUAAAC的出现","authors":"H. Geurdes","doi":"10.35248/2161-0517.20.9.198","DOIUrl":null,"url":null,"abstract":"In the present brief report we look into the slippery sequence TTTAAAC (in cDNA format) of the ORF1ab protein of SARS-CoV-2. We found a number of TTTAAAC sequences where only one is actively producing a shift-1. There are three other sequences exactly positioned in the read-through of mRNA as the aforementioned. They do not produce a-1 frameshift. There is one position where in addition a pseudoknot occurs but no frameshift. We ask if it is possible to enforce or prevent shifts in TTTAAAC to destroy the ORF1ab derived proteins such as RNA-dependent RNA polymerase and/or 2’-O-ribose methyltransferase. Finally an mRNA polymer repressor of the one single effective frameshift is proposed for further research into a medicinal treatment. Perhaps that there are specific protein repressors.","PeriodicalId":91631,"journal":{"name":"Virology & mycology : infectious diseases","volume":"9 1","pages":"1-4"},"PeriodicalIF":0.0000,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Occurrence of the Slippery Sequence UUUAAAC in the RNA Genome 2 that generates the ORF1ab Protein of SARS-CoV-2\",\"authors\":\"H. Geurdes\",\"doi\":\"10.35248/2161-0517.20.9.198\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"In the present brief report we look into the slippery sequence TTTAAAC (in cDNA format) of the ORF1ab protein of SARS-CoV-2. We found a number of TTTAAAC sequences where only one is actively producing a shift-1. There are three other sequences exactly positioned in the read-through of mRNA as the aforementioned. They do not produce a-1 frameshift. There is one position where in addition a pseudoknot occurs but no frameshift. We ask if it is possible to enforce or prevent shifts in TTTAAAC to destroy the ORF1ab derived proteins such as RNA-dependent RNA polymerase and/or 2’-O-ribose methyltransferase. Finally an mRNA polymer repressor of the one single effective frameshift is proposed for further research into a medicinal treatment. Perhaps that there are specific protein repressors.\",\"PeriodicalId\":91631,\"journal\":{\"name\":\"Virology & mycology : infectious diseases\",\"volume\":\"9 1\",\"pages\":\"1-4\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Virology & mycology : infectious diseases\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.35248/2161-0517.20.9.198\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Virology & mycology : infectious diseases","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.35248/2161-0517.20.9.198","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
在本简短的报告中,我们研究了SARS-CoV-2的ORF1ab蛋白的光滑序列TTTAAAC (cDNA格式)。我们发现了许多TTTAAAC序列,其中只有一个是主动产生移位-1。还有另外三个序列与前面提到的完全一样位于mRNA的读透中。它们不会产生a-1移码。另外还有一个位置出现伪结,但没有移码。我们想知道是否有可能强制或阻止TTTAAAC的转移来破坏ORF1ab衍生的蛋白质,如RNA依赖性RNA聚合酶和/或2 ' - o -核糖甲基转移酶。最后提出了一种单一有效移码的mRNA聚合物阻遏物,用于进一步研究药物治疗。也许存在特定的蛋白质抑制因子。
Occurrence of the Slippery Sequence UUUAAAC in the RNA Genome 2 that generates the ORF1ab Protein of SARS-CoV-2
In the present brief report we look into the slippery sequence TTTAAAC (in cDNA format) of the ORF1ab protein of SARS-CoV-2. We found a number of TTTAAAC sequences where only one is actively producing a shift-1. There are three other sequences exactly positioned in the read-through of mRNA as the aforementioned. They do not produce a-1 frameshift. There is one position where in addition a pseudoknot occurs but no frameshift. We ask if it is possible to enforce or prevent shifts in TTTAAAC to destroy the ORF1ab derived proteins such as RNA-dependent RNA polymerase and/or 2’-O-ribose methyltransferase. Finally an mRNA polymer repressor of the one single effective frameshift is proposed for further research into a medicinal treatment. Perhaps that there are specific protein repressors.