formicae链霉菌KY5的基因组挖掘用于潜在药物天然产物表征

M. Shah, S. Gul, A. Amjad, M. Javed, Batool Fatima, H. Nawaz, Jaweria Ishaq
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引用次数: 1

摘要

链霉菌属已经成为各种具有临床意义的生物活性代谢物的来源。在分类学上,formicae链霉菌KY5是一个不同的新种。formicae KY5的全基因组序列在公共DNA序列数据库中可供不同的分析。基因组序列的可及性为探索这种独特链霉菌物种的次生代谢物潜力提供了极好的机会。本研究利用先进的生物信息学资源对S. formicae KY5的全基因组序列进行了注释。生物信息学工具用于定位隐藏在其生物合成基因簇(bgc)下的所有次生代谢物。发现S. formicae KY5通过指定的基因组编码合成不同的和多种次生代谢物。预测分析表明,该菌株有34个基因簇编码潜在的次生代谢产物。为了与其他药物结构相似,我们扫描药物库数据库,从PDB中检索到相似度最高的药物靶点和药物进行分子对接。通过分子操作工具进行分子对接分析,评价化合物的类药潜力。从S。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Genome Mining of Streptomyces formicae KY5 for Potential Drug like Natural Products Characterizations
Genus Streptomyces has been a source of various clinically significant bioactive metabolites. Taxonomically, Streptomyces formicae KY5 is a new and different species. The complete genome sequences of S. formicae KY5 is available in the public DNA sequence databases for different analysis. The accessibility of the genomic sequence presents an excellent opportunity to explore the secondary metabolites potential of this distinct Streptomyces species. In this study, we employed the advance bioinformatics resources to annotate the total genome sequence of S. formicae KY5. Bioinformatics tools are applied to locate all the secondary metabolites hiding beneath their biosynthetic gene clusters (BGCs). The S. formicae KY5 is found to synthesis distinct and various secondary metabolites by undergoing the designated genomic encoding. Predictive analysis conveys that this strain has 34 gene clusters to encode potential secondary metabolites. For structural similarity with other drugs, we scanned the drug bank database, drug target and drug with the highest similarity was retrieved from PDB for molecular docking. Molecular docking analysis was carried out through molecular operating tool to evaluate drug-like potential of the chemical compounds. Three drugs like compounds were predicted from S.
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