核磁共振弛豫参数中包含多少熵?

Falk Hoffmann, F. Mulder, Lars V. Schäfer
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引用次数: 14

摘要

溶液态核磁共振弛豫实验是在原子分辨率上研究蛋白质内部动力学的基础,时间尺度比整体旋转翻滚时间τR快。由于核磁共振弛豫参数描述的运动与像构象熵这样的热力学量有关,那么问题就出现了,在这段翻滚时间内,总熵中有多少是包含的。通过对T4溶菌酶的全原子分子动力学模拟,我们发现主链的熵积累相当快,因此大部分熵确实包含在短时动力学中。相反,在超过τR的时间尺度上,侧链的慢动力学对侧链构象熵的贡献是显著的,在提取准确的热力学性质时应考虑到这一点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
How Much Entropy Is Contained in NMR Relaxation Parameters?
Solution-state NMR relaxation experiments are the cornerstone to study internal protein dynamics at an atomic resolution on time scales that are faster than the overall rotational tumbling time τR. Since the motions described by NMR relaxation parameters are connected to thermodynamic quantities like conformational entropies, the question arises how much of the total entropy is contained within this tumbling time. Using all-atom molecular dynamics simulations of the T4 lysozyme, we found that entropy buildup is rather fast for the backbone, such that the majority of the entropy is indeed contained in the short-time dynamics. In contrast, the contribution of the slow dynamics of side chains on time scales beyond τR on the side-chain conformational entropy is significant and should be taken into account for the extraction of accurate thermodynamic properties.
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