利用gabor特征和深度神经网络自动检测乳腺癌组织病理学图像中的有丝分裂图像

Maqlin Paramanandam, Robinson Thamburaj, J. Mammen
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引用次数: 0

摘要

乳腺癌组织病理学切片中有丝分裂数字的计数是决定肿瘤增殖活性的最重要的独立预后因素。尽管遵循严格的协议,有丝分裂计数活动遭受主观性和相当数量的观察者可变性,尽管是一项艰巨的任务。随着全切片扫描仪的出现,对有丝分裂数字自动检测的兴趣重新燃起。近年来,有丝分裂检测的重大挑战竞赛不断举行,参与者开发了几种研究方法。本文提出了一种利用Gabor特征和深度信念网络深度神经网络架构(DBN-DNN)对苏木精和伊红染色的乳腺癌组织病理学图像进行有效的有丝分裂检测方法。该方法已在ICPR 2012会议上举行的MITOS竞赛的公开数据集中的乳腺组织病理学图像上进行了评估。它包含226个有丝分裂,由几位病理学家在35个hpf和15个测试hpf上注释,f测量值为0.74。此外,上述方法还在ICPR 2014年会议上举行的MITOSISATYPIA大挑战的3张载玻片上进行了测试,这是MITOS的扩展,包含749个有丝分裂,注释在1200个hfs上。本研究使用来自MITOS-ATYPIA训练数据集的3张幻灯片(294张hfs)进行评估,结果显示每张幻灯片的f值分别为0.65、0.72和0.74。该方法快速,计算简单,但其准确性和特异性可与上述大挑战的最佳获胜方法相媲美。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
AUTOMATED DETECTION OF MITOTIC FIGURES IN BREAST CANCER HISTOPATHOLOGY IMAGES USING GABOR FEATURES AND DEEP NEURAL NETWORKS
The count of mitotic figures in Breast cancer histopathology slides is the most significant independent prognostic factor enabling determination of the proliferative activity of the tumor. In spite of the strict protocols followed, the mitotic counting activity suffers from subjectivity and considerable amount of observer variability despite being a laborious task. Interest in automated detection of mitotic figures has been rekindled with the advent of Whole Slide Scanners. Subsequently mitotic detection grand challenge contests have been held in recent years and several research methodologies developed by their participants. This paper proposes an efficient mitotic detection methodology for Hematoxylin and Eosin stained Breast cancer Histopathology Images using Gabor features and a Deep Belief NetworkDeep Neural Network architecture (DBN-DNN). The proposed method has been evaluated on breast histopathology images from the publicly available dataset from MITOS contest held at the ICPR 2012 conference. It contains 226 mitoses annotated on 35 HPFs by several pathologists and 15 testing HPFs, yielding an F-measure of 0.74. In addition the said methodology was also tested on 3 slides from the MITOSISATYPIA grand challenge held at the ICPR 2014 conference, an extension of MITOS containing 749 mitoses annotated on 1200 HPFs, by pathologists worldwide. This study has employed 3 slides (294 HPFs) from the MITOS-ATYPIA training dataset in its evaluation and the results showed F-measures 0.65, 0.72and 0.74 for each slide. The proposed method is fast and computationally simple yet its accuracy and specificity is comparable to the best winning methods of the aforementioned grand challenges.
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