稻象甲与玉米象甲线粒体全基因组的比较(鞘翅目:象鼻虫科)

Q1 Agricultural and Biological Sciences
James Adebayo Ojo , M. Carmen Valero , Weilin Sun , Brad S. Coates , Adebayo Amos Omoloye , Barry R. Pittendrigh
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引用次数: 10

摘要

水稻象甲Sitophilus oryzae (17,602 bp)和玉米象甲S. zeamais (18,105 bp;鞘翅目:Curculionidae: Dryophthorinae),编码13个蛋白质编码基因(PCGs), 22个转移rna, 2个核糖体rna,在动物中是典型的。在象鼻虫科(象鼻虫科)中,迄今所描述的富含A + t的控制区最长的是S. oryzae (2818 bp)和S. zeamais (2832 bp)。此外,由于串联重复序列的扩展,非编码基因间区域的大小也有所增加,但在玉米玉米中(606 bp)比稻谷玉米中(109 bp)更为明显。在稻谷和玉米中分别发现69个和22个突变,其中68个和2个突变发生在PCG序列中,多数突变发生在NADH脱氢酶亚基i。基于全有丝分裂基因组的PCG序列分析支持Curculionoidea和tenbrionoidea为单系类群,而Cucujoidea和Elateroidea为副系类群。这两种象虫的有丝分裂基因组提供了curculionid甲虫之间短期进化关系的见解,并为破译鞘翅目更广泛的系统问题提供了潜在的资源。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Comparison of full mitochondrial genomes for the rice weevil, Sitophilus oryzae and the maize weevil, Sitophilus zeamais (Coleoptera: Curculionidae)

Complete mitochondrial genome sequences were assembled for the rice weevil, Sitophilus oryzae (17,602 bp) and the maize weevil, S. zeamais (18,105 bp; Coleoptera: Curculionidae: Dryophthorinae), which encode 13 protein coding genes (PCGs), 22 transfer RNAs, and 2 ribosomal RNAs that is typical among Animalia. The A + T-rich control regions of S. oryzae (2818 bp) and S. zeamais (2832 bp) are the longest described to date among curculionoidea (weevils). Additionally, non-coding intergenic regions have increased in size due to expansion of tandem repeat arrays, but is more pronounced in S. zeamais (606 bp) compared to S. oryzae (109 bp). A total of 69 and 22 substitution mutations were found among reads from S. oryzae and S. zeamais, out of which 68 and 2 were predicted in the PCGs respectively, with a majority in NADH Dehydrogenase subunit I. Phylogenetic analyses of coleopteran insects based upon full mitogenomes PCG sequence supported the existence of Curculionoidea and Tenebrionoidea as a monophyletic group, whereas the Cucujoidea and Elateroidea remain paraphyletic. The mitogenomes of these two Sitophilus species provide insight into short-term evolutionary relationships among curculionid beetles, and provide resources for the potential deciphering of more broad systematic questions in the Order Coleoptera.

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来源期刊
Agri Gene
Agri Gene Agricultural and Biological Sciences-Agricultural and Biological Sciences (miscellaneous)
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期刊介绍: Agri Gene publishes papers that focus on the regulation, expression, function and evolution of genes in crop plants, farm animals, and agriculturally important insects and microorganisms. Agri Gene strives to be a diverse journal and topics in multiple fields will be considered for publication so long as their main focus is on agriculturally important organisms (plants, animals, insects, or microorganisms). Although not limited to the following, some examples of potential topics include: Gene discovery and characterization. Genetic markers to guide traditional breeding. Genetic effects of transposable elements. Evolutionary genetics, molecular evolution, population genetics, and phylogenetics. Profiling of gene expression and genetic variation. Biotechnology and crop or livestock improvement. Genetic improvement of biological control microorganisms. Genetic control of secondary metabolic pathways and metabolic enzymes of crop pathogens. Transcription analysis of beneficial or pest insect developmental stages Agri Gene encourages submission of novel manuscripts that present a reasonable level of analysis, functional relevance and/or mechanistic insight. Agri Gene also welcomes papers that have predominantly a descriptive component but improve the essential basis of knowledge for subsequent functional studies, or which provide important confirmation of recently published discoveries provided that the information is new.
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