James Adebayo Ojo , M. Carmen Valero , Weilin Sun , Brad S. Coates , Adebayo Amos Omoloye , Barry R. Pittendrigh
{"title":"稻象甲与玉米象甲线粒体全基因组的比较(鞘翅目:象鼻虫科)","authors":"James Adebayo Ojo , M. Carmen Valero , Weilin Sun , Brad S. Coates , Adebayo Amos Omoloye , Barry R. Pittendrigh","doi":"10.1016/j.aggene.2016.09.007","DOIUrl":null,"url":null,"abstract":"<div><p><span><span>Complete mitochondrial genome sequences were assembled for the </span>rice weevil, </span><span><em>Sitophilus</em><em> oryzae</em></span> (17,602<!--> <span>bp) and the maize weevil, </span><em>S. zeamais</em> (18,105<!--> <span><span>bp; Coleoptera: Curculionidae: Dryophthorinae), which encode 13 protein coding genes (PCGs), 22 transfer RNAs, and 2 </span>ribosomal RNAs<span> that is typical among Animalia. The A</span></span> <!-->+<!--> <!-->T-rich control regions of <em>S. oryzae</em> (2818<!--> <!-->bp) and <em>S. zeamais</em> (2832<!--> <span><span>bp) are the longest described to date among curculionoidea (weevils). Additionally, non-coding intergenic regions have increased in size due to expansion of </span>tandem repeat arrays, but is more pronounced in </span><em>S. zeamais</em> (606<!--> <!-->bp) compared to <em>S. oryzae</em> (109<!--> <!-->bp). A total of 69 and 22 substitution mutations were found among reads from <em>S. oryzae</em> and <em>S. zeamais</em><span>, out of which 68 and 2 were predicted in the PCGs respectively, with a majority in NADH Dehydrogenase<span><span> subunit I. Phylogenetic analyses of coleopteran insects based upon full mitogenomes PCG sequence supported the existence of Curculionoidea and Tenebrionoidea as a </span>monophyletic group, whereas the Cucujoidea and Elateroidea remain paraphyletic. The mitogenomes of these two </span></span><em>Sitophilus</em> species provide insight into short-term evolutionary relationships among curculionid beetles, and provide resources for the potential deciphering of more broad systematic questions in the Order Coleoptera.</p></div>","PeriodicalId":37751,"journal":{"name":"Agri Gene","volume":"2 ","pages":"Pages 29-37"},"PeriodicalIF":0.0000,"publicationDate":"2016-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.aggene.2016.09.007","citationCount":"10","resultStr":"{\"title\":\"Comparison of full mitochondrial genomes for the rice weevil, Sitophilus oryzae and the maize weevil, Sitophilus zeamais (Coleoptera: Curculionidae)\",\"authors\":\"James Adebayo Ojo , M. Carmen Valero , Weilin Sun , Brad S. Coates , Adebayo Amos Omoloye , Barry R. Pittendrigh\",\"doi\":\"10.1016/j.aggene.2016.09.007\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p><span><span>Complete mitochondrial genome sequences were assembled for the </span>rice weevil, </span><span><em>Sitophilus</em><em> oryzae</em></span> (17,602<!--> <span>bp) and the maize weevil, </span><em>S. zeamais</em> (18,105<!--> <span><span>bp; Coleoptera: Curculionidae: Dryophthorinae), which encode 13 protein coding genes (PCGs), 22 transfer RNAs, and 2 </span>ribosomal RNAs<span> that is typical among Animalia. The A</span></span> <!-->+<!--> <!-->T-rich control regions of <em>S. oryzae</em> (2818<!--> <!-->bp) and <em>S. zeamais</em> (2832<!--> <span><span>bp) are the longest described to date among curculionoidea (weevils). Additionally, non-coding intergenic regions have increased in size due to expansion of </span>tandem repeat arrays, but is more pronounced in </span><em>S. zeamais</em> (606<!--> <!-->bp) compared to <em>S. oryzae</em> (109<!--> <!-->bp). A total of 69 and 22 substitution mutations were found among reads from <em>S. oryzae</em> and <em>S. zeamais</em><span>, out of which 68 and 2 were predicted in the PCGs respectively, with a majority in NADH Dehydrogenase<span><span> subunit I. Phylogenetic analyses of coleopteran insects based upon full mitogenomes PCG sequence supported the existence of Curculionoidea and Tenebrionoidea as a </span>monophyletic group, whereas the Cucujoidea and Elateroidea remain paraphyletic. The mitogenomes of these two </span></span><em>Sitophilus</em> species provide insight into short-term evolutionary relationships among curculionid beetles, and provide resources for the potential deciphering of more broad systematic questions in the Order Coleoptera.</p></div>\",\"PeriodicalId\":37751,\"journal\":{\"name\":\"Agri Gene\",\"volume\":\"2 \",\"pages\":\"Pages 29-37\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2016-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1016/j.aggene.2016.09.007\",\"citationCount\":\"10\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Agri Gene\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2352215116300381\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"Agricultural and Biological Sciences\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Agri Gene","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2352215116300381","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Agricultural and Biological Sciences","Score":null,"Total":0}
Comparison of full mitochondrial genomes for the rice weevil, Sitophilus oryzae and the maize weevil, Sitophilus zeamais (Coleoptera: Curculionidae)
Complete mitochondrial genome sequences were assembled for the rice weevil, Sitophilus oryzae (17,602 bp) and the maize weevil, S. zeamais (18,105 bp; Coleoptera: Curculionidae: Dryophthorinae), which encode 13 protein coding genes (PCGs), 22 transfer RNAs, and 2 ribosomal RNAs that is typical among Animalia. The A + T-rich control regions of S. oryzae (2818 bp) and S. zeamais (2832 bp) are the longest described to date among curculionoidea (weevils). Additionally, non-coding intergenic regions have increased in size due to expansion of tandem repeat arrays, but is more pronounced in S. zeamais (606 bp) compared to S. oryzae (109 bp). A total of 69 and 22 substitution mutations were found among reads from S. oryzae and S. zeamais, out of which 68 and 2 were predicted in the PCGs respectively, with a majority in NADH Dehydrogenase subunit I. Phylogenetic analyses of coleopteran insects based upon full mitogenomes PCG sequence supported the existence of Curculionoidea and Tenebrionoidea as a monophyletic group, whereas the Cucujoidea and Elateroidea remain paraphyletic. The mitogenomes of these two Sitophilus species provide insight into short-term evolutionary relationships among curculionid beetles, and provide resources for the potential deciphering of more broad systematic questions in the Order Coleoptera.
Agri GeneAgricultural and Biological Sciences-Agricultural and Biological Sciences (miscellaneous)
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Agri Gene publishes papers that focus on the regulation, expression, function and evolution of genes in crop plants, farm animals, and agriculturally important insects and microorganisms. Agri Gene strives to be a diverse journal and topics in multiple fields will be considered for publication so long as their main focus is on agriculturally important organisms (plants, animals, insects, or microorganisms). Although not limited to the following, some examples of potential topics include: Gene discovery and characterization. Genetic markers to guide traditional breeding. Genetic effects of transposable elements. Evolutionary genetics, molecular evolution, population genetics, and phylogenetics. Profiling of gene expression and genetic variation. Biotechnology and crop or livestock improvement. Genetic improvement of biological control microorganisms. Genetic control of secondary metabolic pathways and metabolic enzymes of crop pathogens. Transcription analysis of beneficial or pest insect developmental stages Agri Gene encourages submission of novel manuscripts that present a reasonable level of analysis, functional relevance and/or mechanistic insight. Agri Gene also welcomes papers that have predominantly a descriptive component but improve the essential basis of knowledge for subsequent functional studies, or which provide important confirmation of recently published discoveries provided that the information is new.