atp8是否存在于原生动物的线粒体基因组中?

Q4 Biochemistry, Genetics and Molecular Biology
Daisuke Shimada , Shimpei F. Hiruta , Kazuhiro Takahoshi , Hiroshi Kajihara
{"title":"atp8是否存在于原生动物的线粒体基因组中?","authors":"Daisuke Shimada ,&nbsp;Shimpei F. Hiruta ,&nbsp;Kazuhiro Takahoshi ,&nbsp;Hiroshi Kajihara","doi":"10.1016/j.angen.2023.200161","DOIUrl":null,"url":null,"abstract":"<div><p><span>The adenosine triphosphate (ATP) synthase F</span><sub>0</sub> subunit 8 gene (<em>atp8</em><span><span><span>) had been believed to be absent in mitochondrial genomes<span> of platyhelminths until the late 2010s, since when multiple lines of emergent evidence have suggested that this gene is actually present, albeit in highly derived forms, throughout the entire phylum except for the parasitic </span></span>Neodermata (tapeworms, </span>flukes, and their kin). Of about 11 non-parasitic (turbellarian) major platyhelminth subtaxa, the existence of </span><em>atp8</em><span><span> has hitherto been documented in five (Catenulida, Macrostomorpha, Polycladida, </span>Rhabdocoela, and Tricladida), while it remains open in the remaining six (Prorhynchida, Gnosonesmida, Proseriata, Fecampiida, Prolecithophora, and Bothrioplanida). Here we report the mitochondrial genome sequence of an undetermined marine interstitial turbellarian species in the genus </span><em>Nematoplana</em> <span>Meixner, 1938</span><span><span> as the first representative of Proseriata. This circular genome comprises 16,106 bp (but potentially 18,812–19,277 bp when unresolved, non-coding tandem repeats are considered) and includes 38 genes, viz. 23 transfer </span>RNA genes, 13 protein-coding genes (including the putative </span><em>atp8</em>), and two ribosomal RNA genes. The putative <em>atp8</em> in <em>Nematoplana</em> sp. was not annotated by a standard automated procedure but was detected by manual inspection. If it encodes a translated product, it consists of 156 bp, with the potential 52-amino-acid-residue product beginning with MPHV, instead of the metazoan-canonical MPQL, and containing a single putative transmembrane region expanding from the 7th to the 29th amino-acid positions. While our finding seemingly strengthens the hypothesis that <em>atp8</em> is in the ground pattern of flatworm mitochondrial genomes, whether the putative <em>atp8</em> in flatworms is actually transcribed and translated to form a functional ATP synthetase F<sub>0</sub> subunit should be tested in future studies.</p></div>","PeriodicalId":7893,"journal":{"name":"Animal Gene","volume":"30 ","pages":"Article 200161"},"PeriodicalIF":0.0000,"publicationDate":"2023-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Does atp8 exist in the mitochondrial genome of Proseriata (Metazoa: Platyhelminthes)?\",\"authors\":\"Daisuke Shimada ,&nbsp;Shimpei F. Hiruta ,&nbsp;Kazuhiro Takahoshi ,&nbsp;Hiroshi Kajihara\",\"doi\":\"10.1016/j.angen.2023.200161\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p><span>The adenosine triphosphate (ATP) synthase F</span><sub>0</sub> subunit 8 gene (<em>atp8</em><span><span><span>) had been believed to be absent in mitochondrial genomes<span> of platyhelminths until the late 2010s, since when multiple lines of emergent evidence have suggested that this gene is actually present, albeit in highly derived forms, throughout the entire phylum except for the parasitic </span></span>Neodermata (tapeworms, </span>flukes, and their kin). Of about 11 non-parasitic (turbellarian) major platyhelminth subtaxa, the existence of </span><em>atp8</em><span><span> has hitherto been documented in five (Catenulida, Macrostomorpha, Polycladida, </span>Rhabdocoela, and Tricladida), while it remains open in the remaining six (Prorhynchida, Gnosonesmida, Proseriata, Fecampiida, Prolecithophora, and Bothrioplanida). Here we report the mitochondrial genome sequence of an undetermined marine interstitial turbellarian species in the genus </span><em>Nematoplana</em> <span>Meixner, 1938</span><span><span> as the first representative of Proseriata. This circular genome comprises 16,106 bp (but potentially 18,812–19,277 bp when unresolved, non-coding tandem repeats are considered) and includes 38 genes, viz. 23 transfer </span>RNA genes, 13 protein-coding genes (including the putative </span><em>atp8</em>), and two ribosomal RNA genes. The putative <em>atp8</em> in <em>Nematoplana</em> sp. was not annotated by a standard automated procedure but was detected by manual inspection. If it encodes a translated product, it consists of 156 bp, with the potential 52-amino-acid-residue product beginning with MPHV, instead of the metazoan-canonical MPQL, and containing a single putative transmembrane region expanding from the 7th to the 29th amino-acid positions. While our finding seemingly strengthens the hypothesis that <em>atp8</em> is in the ground pattern of flatworm mitochondrial genomes, whether the putative <em>atp8</em> in flatworms is actually transcribed and translated to form a functional ATP synthetase F<sub>0</sub> subunit should be tested in future studies.</p></div>\",\"PeriodicalId\":7893,\"journal\":{\"name\":\"Animal Gene\",\"volume\":\"30 \",\"pages\":\"Article 200161\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Animal Gene\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2352406523000179\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Animal Gene","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2352406523000179","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 0

摘要

直到2010年代末,三磷酸腺苷(ATP)合酶F0亚单位8基因(atp8)一直被认为不存在于扁虫的线粒体基因组中,因为当时多个新出现的证据表明,该基因实际上存在于整个门中,尽管是以高度衍生的形式存在,但寄生的新皮动物(绦虫、吸虫及其亲属)除外。在大约11种非寄生(turbellarian)的主要扁虫亚目中,迄今为止,atp8在5种(Catenulida、Macromorpha、Polycladida、Rhabdocoela和Tricladida)中存在,而在其余6种(Prorhinchida、Gnosonesmida、Proseriata、Fecampiida、Prolechiphora和Bothrioplanida)中仍然开放。在这里,我们报道了一个尚未确定的海洋间质turbellarian物种的线粒体基因组序列,Nematoplana Meixner属,1938年作为Prosecriata的第一个代表。该环状基因组包括16106个碱基(但如果考虑未解决的非编码串联重复序列,则可能为18812–19277个碱基),包括38个基因,即23个转移RNA基因、13个蛋白质编码基因(包括推定的atp8)和两个核糖体RNA基因。Nematoplana sp.中推定的atp8没有通过标准自动化程序进行注释,而是通过手动检查进行检测。如果它编码翻译产物,它由156bp组成,潜在的52个氨基酸残基产物从MPHV开始,而不是后生动物的典型MPQL,并包含从第7个氨基酸位置扩展到第29个氨基酸位置的单个假定跨膜区。虽然我们的发现似乎加强了atp8在扁虫线粒体基因组基础模式中的假设,但扁虫中假定的atp8是否真的被转录和翻译成功能性ATP合成酶F0亚基,应该在未来的研究中进行测试。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Does atp8 exist in the mitochondrial genome of Proseriata (Metazoa: Platyhelminthes)?

The adenosine triphosphate (ATP) synthase F0 subunit 8 gene (atp8) had been believed to be absent in mitochondrial genomes of platyhelminths until the late 2010s, since when multiple lines of emergent evidence have suggested that this gene is actually present, albeit in highly derived forms, throughout the entire phylum except for the parasitic Neodermata (tapeworms, flukes, and their kin). Of about 11 non-parasitic (turbellarian) major platyhelminth subtaxa, the existence of atp8 has hitherto been documented in five (Catenulida, Macrostomorpha, Polycladida, Rhabdocoela, and Tricladida), while it remains open in the remaining six (Prorhynchida, Gnosonesmida, Proseriata, Fecampiida, Prolecithophora, and Bothrioplanida). Here we report the mitochondrial genome sequence of an undetermined marine interstitial turbellarian species in the genus Nematoplana Meixner, 1938 as the first representative of Proseriata. This circular genome comprises 16,106 bp (but potentially 18,812–19,277 bp when unresolved, non-coding tandem repeats are considered) and includes 38 genes, viz. 23 transfer RNA genes, 13 protein-coding genes (including the putative atp8), and two ribosomal RNA genes. The putative atp8 in Nematoplana sp. was not annotated by a standard automated procedure but was detected by manual inspection. If it encodes a translated product, it consists of 156 bp, with the potential 52-amino-acid-residue product beginning with MPHV, instead of the metazoan-canonical MPQL, and containing a single putative transmembrane region expanding from the 7th to the 29th amino-acid positions. While our finding seemingly strengthens the hypothesis that atp8 is in the ground pattern of flatworm mitochondrial genomes, whether the putative atp8 in flatworms is actually transcribed and translated to form a functional ATP synthetase F0 subunit should be tested in future studies.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Animal Gene
Animal Gene Agricultural and Biological Sciences-Insect Science
自引率
0.00%
发文量
16
期刊介绍: Gene Reports publishes papers that focus on the regulation, expression, function and evolution of genes in all biological contexts, including all prokaryotic and eukaryotic organisms, as well as viruses. Gene Reports strives to be a very diverse journal and topics in all fields will be considered for publication. Although not limited to the following, some general topics include: DNA Organization, Replication & Evolution -Focus on genomic DNA (chromosomal organization, comparative genomics, DNA replication, DNA repair, mobile DNA, mitochondrial DNA, chloroplast DNA). Expression & Function - Focus on functional RNAs (microRNAs, tRNAs, rRNAs, mRNA splicing, alternative polyadenylation) Regulation - Focus on processes that mediate gene-read out (epigenetics, chromatin, histone code, transcription, translation, protein degradation). Cell Signaling - Focus on mechanisms that control information flow into the nucleus to control gene expression (kinase and phosphatase pathways controlled by extra-cellular ligands, Wnt, Notch, TGFbeta/BMPs, FGFs, IGFs etc.) Profiling of gene expression and genetic variation - Focus on high throughput approaches (e.g., DeepSeq, ChIP-Seq, Affymetrix microarrays, proteomics) that define gene regulatory circuitry, molecular pathways and protein/protein networks. Genetics - Focus on development in model organisms (e.g., mouse, frog, fruit fly, worm), human genetic variation, population genetics, as well as agricultural and veterinary genetics. Molecular Pathology & Regenerative Medicine - Focus on the deregulation of molecular processes in human diseases and mechanisms supporting regeneration of tissues through pluripotent or multipotent stem cells.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信