C. Zhang , G. Yang , F. Li , Y. Wen , Y. Yao , H. Shu , A. Simon , J.-L. Dillenseger , J.-L. Coatrieux
{"title":"CTANet:用于HIFU治疗的MR图像子宫区域半监督分割的基于置信度的阈值自适应网络","authors":"C. Zhang , G. Yang , F. Li , Y. Wen , Y. Yao , H. Shu , A. Simon , J.-L. Dillenseger , J.-L. Coatrieux","doi":"10.1016/j.irbm.2022.100747","DOIUrl":null,"url":null,"abstract":"<div><h3>Objectives</h3><p>The accurate preoperative segmentation of the uterus and uterine fibroids from magnetic resonance images (MRI) is an essential step for diagnosis and real-time ultrasound guidance during high-intensity focused ultrasound (HIFU) surgery. Conventional supervised methods are effective techniques for image segmentation. Recently, semi-supervised segmentation approaches have been reported in the literature. One popular technique for semi-supervised methods is to use pseudo-labels to artificially annotate unlabeled data. However, many existing pseudo-label generations rely on a fixed threshold used to generate a confidence map, regardless of the proportion of unlabeled and labeled data.</p></div><div><h3>Materials and Methods</h3><p>To address this issue, we propose a novel semi-supervised framework called Confidence-based Threshold Adaptation Network (CTANet) to improve the quality of pseudo-labels. Specifically, we propose an online pseudo-labels method to automatically adjust the threshold, producing high-confident unlabeled annotations and boosting segmentation accuracy. To further improve the network's generalization to fit the diversity of different patients, we design a novel mixup strategy by regularizing the network on each layer in the decoder part and introducing a consistency regularization loss between the outputs of two sub-networks in CTANet.</p></div><div><h3>Results</h3><p>We compare our method with several state-of-the-art semi-supervised segmentation methods on the same uterine fibroids dataset containing 297 patients. The performance is evaluated by the Dice similarity coefficient, the precision, and the recall. The results show that our method outperforms other semi-supervised learning methods. Moreover, for the same training set, our method approaches the segmentation performance of a fully supervised U-Net (100% annotated data) but using 4 times less annotated data (25% annotated data, 75% unannotated data).</p></div><div><h3>Conclusion</h3><p>Experimental results are provided to illustrate the effectiveness of the proposed semi-supervised approach. The proposed method can contribute to multi-class segmentation of uterine regions from MRI for HIFU treatment.</p></div>","PeriodicalId":14605,"journal":{"name":"Irbm","volume":null,"pages":null},"PeriodicalIF":5.6000,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"CTANet: Confidence-Based Threshold Adaption Network for Semi-Supervised Segmentation of Uterine Regions from MR Images for HIFU Treatment\",\"authors\":\"C. Zhang , G. Yang , F. Li , Y. Wen , Y. Yao , H. Shu , A. Simon , J.-L. Dillenseger , J.-L. Coatrieux\",\"doi\":\"10.1016/j.irbm.2022.100747\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Objectives</h3><p>The accurate preoperative segmentation of the uterus and uterine fibroids from magnetic resonance images (MRI) is an essential step for diagnosis and real-time ultrasound guidance during high-intensity focused ultrasound (HIFU) surgery. Conventional supervised methods are effective techniques for image segmentation. Recently, semi-supervised segmentation approaches have been reported in the literature. One popular technique for semi-supervised methods is to use pseudo-labels to artificially annotate unlabeled data. However, many existing pseudo-label generations rely on a fixed threshold used to generate a confidence map, regardless of the proportion of unlabeled and labeled data.</p></div><div><h3>Materials and Methods</h3><p>To address this issue, we propose a novel semi-supervised framework called Confidence-based Threshold Adaptation Network (CTANet) to improve the quality of pseudo-labels. Specifically, we propose an online pseudo-labels method to automatically adjust the threshold, producing high-confident unlabeled annotations and boosting segmentation accuracy. To further improve the network's generalization to fit the diversity of different patients, we design a novel mixup strategy by regularizing the network on each layer in the decoder part and introducing a consistency regularization loss between the outputs of two sub-networks in CTANet.</p></div><div><h3>Results</h3><p>We compare our method with several state-of-the-art semi-supervised segmentation methods on the same uterine fibroids dataset containing 297 patients. The performance is evaluated by the Dice similarity coefficient, the precision, and the recall. The results show that our method outperforms other semi-supervised learning methods. Moreover, for the same training set, our method approaches the segmentation performance of a fully supervised U-Net (100% annotated data) but using 4 times less annotated data (25% annotated data, 75% unannotated data).</p></div><div><h3>Conclusion</h3><p>Experimental results are provided to illustrate the effectiveness of the proposed semi-supervised approach. 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CTANet: Confidence-Based Threshold Adaption Network for Semi-Supervised Segmentation of Uterine Regions from MR Images for HIFU Treatment
Objectives
The accurate preoperative segmentation of the uterus and uterine fibroids from magnetic resonance images (MRI) is an essential step for diagnosis and real-time ultrasound guidance during high-intensity focused ultrasound (HIFU) surgery. Conventional supervised methods are effective techniques for image segmentation. Recently, semi-supervised segmentation approaches have been reported in the literature. One popular technique for semi-supervised methods is to use pseudo-labels to artificially annotate unlabeled data. However, many existing pseudo-label generations rely on a fixed threshold used to generate a confidence map, regardless of the proportion of unlabeled and labeled data.
Materials and Methods
To address this issue, we propose a novel semi-supervised framework called Confidence-based Threshold Adaptation Network (CTANet) to improve the quality of pseudo-labels. Specifically, we propose an online pseudo-labels method to automatically adjust the threshold, producing high-confident unlabeled annotations and boosting segmentation accuracy. To further improve the network's generalization to fit the diversity of different patients, we design a novel mixup strategy by regularizing the network on each layer in the decoder part and introducing a consistency regularization loss between the outputs of two sub-networks in CTANet.
Results
We compare our method with several state-of-the-art semi-supervised segmentation methods on the same uterine fibroids dataset containing 297 patients. The performance is evaluated by the Dice similarity coefficient, the precision, and the recall. The results show that our method outperforms other semi-supervised learning methods. Moreover, for the same training set, our method approaches the segmentation performance of a fully supervised U-Net (100% annotated data) but using 4 times less annotated data (25% annotated data, 75% unannotated data).
Conclusion
Experimental results are provided to illustrate the effectiveness of the proposed semi-supervised approach. The proposed method can contribute to multi-class segmentation of uterine regions from MRI for HIFU treatment.
期刊介绍:
IRBM is the journal of the AGBM (Alliance for engineering in Biology an Medicine / Alliance pour le génie biologique et médical) and the SFGBM (BioMedical Engineering French Society / Société française de génie biologique médical) and the AFIB (French Association of Biomedical Engineers / Association française des ingénieurs biomédicaux).
As a vehicle of information and knowledge in the field of biomedical technologies, IRBM is devoted to fundamental as well as clinical research. Biomedical engineering and use of new technologies are the cornerstones of IRBM, providing authors and users with the latest information. Its six issues per year propose reviews (state-of-the-art and current knowledge), original articles directed at fundamental research and articles focusing on biomedical engineering. All articles are submitted to peer reviewers acting as guarantors for IRBM''s scientific and medical content. The field covered by IRBM includes all the discipline of Biomedical engineering. Thereby, the type of papers published include those that cover the technological and methodological development in:
-Physiological and Biological Signal processing (EEG, MEG, ECG…)-
Medical Image processing-
Biomechanics-
Biomaterials-
Medical Physics-
Biophysics-
Physiological and Biological Sensors-
Information technologies in healthcare-
Disability research-
Computational physiology-
…