贴纸间隔物的分离能量学控制生物分子缩合物的聚结。

Aniruddha Chattaraj, Eugene I Shakhnovich
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引用次数: 0

摘要

生物聚合物冷凝物通常以多液滴状态出现,并且在实验时间跨度内从未聚结为一个大液滴。这与经典聚合物物理学的预测相矛盾,后者认为相变之外存在一个大液滴。先前的工作表明,生物聚合物的粘贴间隔物结构可以动态稳定多液滴状态。在这里,我们使用元动力学方法模拟了冷凝液的聚结,并揭示了液滴融合的两种不同物理机制。当贴纸表现出缓慢的交换时,由贴纸间隔聚合物制成的冷凝液很容易发生动力学停滞,而在类似饱和水平下快速交换的贴纸允许合并到平衡状态。另一方面,由均聚物组成的缩合物很容易融合,直到它们达到阈值密度。我们还表明,链的凝聚物间交换提供了驱动聚变的一般机制。我们绘制了动力学阻滞的机制范围,从缓慢的贴纸交换动力学到贴纸和间隔物的能量分离介导的密度。在这种情况下,我们的模拟预测,在特定的粘贴间隔物能量学范围内,生物冷凝物可能表现出重新进入的动态合并行为。这项工作揭示的机制基础在聚合物物理学和凝聚态生物学中具有更广泛的意义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Separation of sticker-spacer energetics governs the coalescence of metastable condensates.

Biological condensates often emerge as a multi-droplet state and never coalesce into one large droplet within the experimental timespan. Previous work revealed that the sticker-spacer architecture of biopolymers may dynamically stabilize the multi-droplet state. Here, we simulate the condensate coalescence using metadynamics approach and reveal two distinct physical mechanisms underlying the fusion of droplets. Condensates made of sticker-spacer polymers readily undergo a kinetic arrest when stickers exhibit slow exchange while fast exchanging stickers at similar levels of saturation allow merger to equilibrium states. On the other hand, condensates composed of homopolymers fuse readily until they reach a threshold density. Increase in entropy upon inter-condensate mixing of chains drives the fusion of sticker-spacer chains. We map the range of mechanisms of kinetic arrest from slow sticker exchange dynamics to density mediated in terms of energetic separation of stickers and spacers. Our predictions appear to be in qualitative agreement with recent experiments probing dynamic nature of protein-RNA condensates.

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