Ravi Goyal, Victor De Gruttola, Jukka-Pekka Onnela
{"title":"将机械网络模型转换为概率模型的框架。","authors":"Ravi Goyal, Victor De Gruttola, Jukka-Pekka Onnela","doi":"10.1093/comnet/cnad034","DOIUrl":null,"url":null,"abstract":"<p><p>There are two prominent paradigms for the modelling of networks: in the first, referred to as the mechanistic approach, one specifies a set of domain-specific mechanistic rules that are used to grow or evolve the network over time; in the second, referred to as the probabilistic approach, one describes a model that specifies the likelihood of observing a given network. Mechanistic models (models developed based on the mechanistic approach) are appealing because they capture scientific processes that are believed to be responsible for network generation; however, they do not easily lend themselves to the use of inferential techniques when compared with probabilistic models. We introduce a general framework for converting a mechanistic network model (MNM) to a probabilistic network model (PNM). The proposed framework makes it possible to identify the essential network properties and their joint probability distribution for some MNMs; doing so makes it possible to address questions such as whether two different mechanistic models generate networks with identical distributions of properties, or whether a network property, such as clustering, is over- or under-represented in the networks generated by the model of interest compared with a reference model. The proposed framework is intended to bridge some of the gap that currently exists between the formulation and representation of mechanistic and PNMs. We also highlight limitations of PNMs that need to be addressed in order to close this gap.</p>","PeriodicalId":15442,"journal":{"name":"Journal of complex networks","volume":"11 5","pages":"cnad034"},"PeriodicalIF":2.2000,"publicationDate":"2023-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10588735/pdf/","citationCount":"0","resultStr":"{\"title\":\"Framework for converting mechanistic network models to probabilistic models.\",\"authors\":\"Ravi Goyal, Victor De Gruttola, Jukka-Pekka Onnela\",\"doi\":\"10.1093/comnet/cnad034\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>There are two prominent paradigms for the modelling of networks: in the first, referred to as the mechanistic approach, one specifies a set of domain-specific mechanistic rules that are used to grow or evolve the network over time; in the second, referred to as the probabilistic approach, one describes a model that specifies the likelihood of observing a given network. Mechanistic models (models developed based on the mechanistic approach) are appealing because they capture scientific processes that are believed to be responsible for network generation; however, they do not easily lend themselves to the use of inferential techniques when compared with probabilistic models. We introduce a general framework for converting a mechanistic network model (MNM) to a probabilistic network model (PNM). The proposed framework makes it possible to identify the essential network properties and their joint probability distribution for some MNMs; doing so makes it possible to address questions such as whether two different mechanistic models generate networks with identical distributions of properties, or whether a network property, such as clustering, is over- or under-represented in the networks generated by the model of interest compared with a reference model. The proposed framework is intended to bridge some of the gap that currently exists between the formulation and representation of mechanistic and PNMs. We also highlight limitations of PNMs that need to be addressed in order to close this gap.</p>\",\"PeriodicalId\":15442,\"journal\":{\"name\":\"Journal of complex networks\",\"volume\":\"11 5\",\"pages\":\"cnad034\"},\"PeriodicalIF\":2.2000,\"publicationDate\":\"2023-10-20\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10588735/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of complex networks\",\"FirstCategoryId\":\"100\",\"ListUrlMain\":\"https://doi.org/10.1093/comnet/cnad034\",\"RegionNum\":4,\"RegionCategory\":\"数学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2023/10/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"MATHEMATICS, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of complex networks","FirstCategoryId":"100","ListUrlMain":"https://doi.org/10.1093/comnet/cnad034","RegionNum":4,"RegionCategory":"数学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2023/10/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"MATHEMATICS, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
Framework for converting mechanistic network models to probabilistic models.
There are two prominent paradigms for the modelling of networks: in the first, referred to as the mechanistic approach, one specifies a set of domain-specific mechanistic rules that are used to grow or evolve the network over time; in the second, referred to as the probabilistic approach, one describes a model that specifies the likelihood of observing a given network. Mechanistic models (models developed based on the mechanistic approach) are appealing because they capture scientific processes that are believed to be responsible for network generation; however, they do not easily lend themselves to the use of inferential techniques when compared with probabilistic models. We introduce a general framework for converting a mechanistic network model (MNM) to a probabilistic network model (PNM). The proposed framework makes it possible to identify the essential network properties and their joint probability distribution for some MNMs; doing so makes it possible to address questions such as whether two different mechanistic models generate networks with identical distributions of properties, or whether a network property, such as clustering, is over- or under-represented in the networks generated by the model of interest compared with a reference model. The proposed framework is intended to bridge some of the gap that currently exists between the formulation and representation of mechanistic and PNMs. We also highlight limitations of PNMs that need to be addressed in order to close this gap.
期刊介绍:
Journal of Complex Networks publishes original articles and reviews with a significant contribution to the analysis and understanding of complex networks and its applications in diverse fields. Complex networks are loosely defined as networks with nontrivial topology and dynamics, which appear as the skeletons of complex systems in the real-world. The journal covers everything from the basic mathematical, physical and computational principles needed for studying complex networks to their applications leading to predictive models in molecular, biological, ecological, informational, engineering, social, technological and other systems. It includes, but is not limited to, the following topics: - Mathematical and numerical analysis of networks - Network theory and computer sciences - Structural analysis of networks - Dynamics on networks - Physical models on networks - Networks and epidemiology - Social, socio-economic and political networks - Ecological networks - Technological and infrastructural networks - Brain and tissue networks - Biological and molecular networks - Spatial networks - Techno-social networks i.e. online social networks, social networking sites, social media - Other applications of networks - Evolving networks - Multilayer networks - Game theory on networks - Biomedicine related networks - Animal social networks - Climate networks - Cognitive, language and informational network