N-(2-氯苯基氨基甲酰基)环己烷甲酰胺的晶体结构、Hirschfeld表面分析和DFT研究

C. Ozer, U. Solmaz, H. Arslan
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引用次数: 6

摘要

用单晶X射线衍射法对N-(2-氯苯基氨基甲酰基)环己烷甲酰胺进行了表征。该化合物C14H17ClN2OS的晶体数据;单斜,空间群P21/n,Z=4,a=5.2385(10)Å,b=17.902(4)Å、c=15.021(3)Å和β=90.86(3)°,V=1408.5(5)Å3,T=153(2)K,μ(MoKα)=0.413 mm-1,Dcalc=1.400 g/cm3,测量到9840次反射(7.082°≤2θ≤50.378°),2519次独特反射(Rint=0.0406,Rsigma=0.0335),这些反射用于所有计算。最终R1为0.0397(I>2σ(I)),wR2为0.0887(所有数据)。标题化合物的褶皱参数(q2=0.019(3)Å,q3=0.578(3)å,θ=1.0(3)°和φ=51(8)°)表明环己烷环采用椅子构象。标题化合物的分子构象通过分子内氢键(N2-H2····Cl1、N2-H2···O1和C2-H2A···S1)和分子间氢键(N1-H1···S1i和C9-HA····S1ii:2-x,2-y,1-z)稳定。分子内氢键(N2-H2···O1和C2-H2A···S1)也形成两个伪六元环。将密度泛函理论在B3LYP/6-311G(d,p)理论水平上优化的气相结构与实验确定的分子结构进行了比较。计算了标题化合物的分子轨道HOMO和LUMO以及能隙,并且标题化合物的HOMO能级和LUMO能级之间的估计能隙(ΔE)为3.5399eV,这意味着标题分子是非常活泼的。Hirschfeld表面分析表明,对晶体堆积最重要的贡献来自H··H(49.0%)、H··C/C·H(12.5%)、H··Cl/Cl·H(10.9%)和H··S/S·H(10.0%)的相互作用。能量框架计算用于分析和可视化晶体堆积的三维拓扑结构。分子间能量分析证实了分散体对标题化合物中分子填料的稳定性的显著贡献。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Crystal structure, Hirshfeld surface analysis, and DFT studies of N-(2-chlorophenylcarbamothioyl)cyclohexanecarboxamide
N-(2-Chlorophenylcarbamothioyl)cyclohexanecarboxamide was characterized by a single crystal X-ray diffraction study. Crystal data for this compound, C14H17ClN2OS; Monoclinic, space group P21/n with Z = 4, a = 5.2385(10) Å, b = 17.902(4) Å, c = 15.021(3) Å, β = 90.86(3)°, V = 1408.5(5) Å3, T = 153(2) K, μ(MoKα) = 0.413 mm-1, Dcalc = 1.400 g/cm3, 9840 reflections measured (7.082° ≤ 2Θ ≤ 50.378°), 2519 unique (Rint = 0.0406, Rsigma = 0.0335) which were used in all calculations. The final R1 was 0.0397 (I > 2σ(I)) and wR2 was 0.0887 (all data). The puckering parameters (q2 = 0.019(3) Å, q3 = 0.578(3) Å, θ = 1.0(3)° and φ = 51(8)°) of the title compound show that the cyclohexane ring adopts a chair conformation. The molecular conformation of the title compound is stabilized by intramolecular hydrogen bonds (N2-H2⋅⋅⋅Cl1, N2-H2⋅⋅⋅O1, and C2-H2A⋅⋅⋅S1) and intermolecular hydrogen bonds (N1-H1⋅⋅⋅S1i and C9-HA⋅⋅⋅S1ii: 2-x, 2-y, 1-z). The intramolecular hydrogen bonds (N2-H2⋅⋅⋅O1 and C2-H2A⋅⋅⋅S1) are also form two pseudo-six-membered rings. Density functional theory optimized structure in the gaseous phase at B3LYP/6-311G(d,p) level of theory has been compared with the experimentally defined molecular structure. The molecular orbitals HOMO and LUMO with the energy gap for the title compound are calculated and the estimated energy gap (ΔE) between the HOMO and LUMO energies levels of the title compound is 3.5399 eV, which implies that the title molecule is very reactive. The Hirshfeld surface analysis reveals that the most important contributions to crystal packing are from H···H (49.0%), H···C/C···H (12.5%), H···Cl/Cl···H (10.9%), and H···S/S···H (10.0%) interactions. The energy-framework calculations are used to analyze and visualize the three-dimensional topology of the crystal packing. The intermolecular energy analysis confirmed a significant contribution of dispersion to the stabilization of molecular packings in the title compound.
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