252个高粱突变体序列作为群体反向遗传资源的登记

IF 0.6 4区 农林科学 Q4 AGRONOMY
Zhanguo Xin, Yinping Jiao, Gloria Burow, Chad Hayes, Junping Chen, John Burke, N. Ace Pugh, Doreen Ware
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引用次数: 0

摘要

诱变是一种产生变异的有效方法,可用于阐明基因功能和为作物改良创造新性状。以高粱(sorghum bicolor L. Moench)自交系BTx623为材料,经甲基磺酸乙酯(EMS)处理的种子进行化学诱变,建立了一个纯种突变体文库。突变体文库显示出广泛的表型多样性,包括具有重要农艺价值的潜在性状。精选252行(regg。不。gs - 794注册。使用Illumina Highseq对GS-1045, PI 701562-PI 701813)进行测序,平均深度为16x。这一努力导致了超过180万个典型的ems诱导突变(变体)的检测和编目。这些变异均匀分布在高粱基因组中,24,757个基因受到可能改变基因功能的影响突变的影响。sorhumbase (https://www.sorghumbase.org)可以在线搜索相关基因的突变。这些测序突变体可以通过GRIN (https://www.ars-grin.gov/)订购,不需要相关费用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Registration of 252 sequenced sorghum mutants as a community reverse genetic resource

Induced mutagenesis is a powerful approach to generate variations that can be used toward the elucidation of gene function and create new traits for crop improvement. We have developed a pedigreed mutant library through chemical mutagenesis with ethyl methanesulfonate (EMS)-treated seed from the sorghum (Sorghum bicolor L. Moench) inbred line BTx623. The mutant library displayed a wide diversity of phenotypes, including potential traits of significant agronomic value. A selection of 252 lines (Reg. no. GS-794–Reg no. GS-1045, PI 701562–PI 701813) were sequenced to an average depth of 16x with paired-end sequencing using Illumina Highseq. This endeavor resulted in the detection and cataloguing of more than 1.8 million canonical EMS-induced mutations (variants). The variants were distributed across the sorghum genome uniformly, with 24,757 genes affected by impactful mutations that may alter the gene function. Mutations in genes of interest can be searched online through SorghumBase (https://www.sorghumbase.org). These sequenced mutants can be ordered through GRIN (https://www.ars-grin.gov/) with no associated fee.

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来源期刊
Journal of Plant Registrations
Journal of Plant Registrations 农林科学-农艺学
CiteScore
1.60
自引率
37.50%
发文量
65
审稿时长
2 months
期刊介绍: The Journal of Plant Registrations is an official publication of the Crop Science Society of America and the premier international venue for plant breeders, geneticists, and genome biologists to publish research describing new and novel plant cultivars, germplasms, parental lines, genetic stocks, and genomic mapping populations. In addition to biomedical, nutritional, and agricultural scientists, the intended audience includes policy makers, humanitarian organizations, and all facets of food, feed, fiber, bioenergy, and shelter industries. The scope of articles includes (1) cultivar, germplasm, parental line, genetic stock, and mapping population registration manuscripts, (2) short manuscripts characterizing accessions held within Plant Germplasm Collection Systems, and (3) descriptions of plant genetic materials that have made a major impact on agricultural security. Registration of plant genetic resources, item (1) above, requires deposit of plant genetic material into the USDA ARS National Plant Germplasm System prior to publication. ­
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