空间填充图的加权平均曲率导数

Q2 Mathematics
A. Akopyan, H. Edelsbrunner
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引用次数: 4

摘要

在三维欧几里得空间中用实心球表示原子,通过取并得到分子的空间填充图。分子动力学模拟其受化学键和其他力(包括溶剂化自由能)影响的运动。形态计量学方法[12,17]将后者写为空间填充图的体积、面积、平均曲率和高斯曲率的加权版本的线性组合。我们给出了加权平均曲率导数的公式。再加上加权体积[7]的导数,加权面积[3]的导数,加权高斯曲率[1]的导数,就得到了溶剂化自由能的形态计量表达式的导数。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The Weighted Mean Curvature Derivative of a Space-Filling Diagram
Abstract Representing an atom by a solid sphere in 3-dimensional Euclidean space, we get the space-filling diagram of a molecule by taking the union. Molecular dynamics simulates its motion subject to bonds and other forces, including the solvation free energy. The morphometric approach [12, 17] writes the latter as a linear combination of weighted versions of the volume, area, mean curvature, and Gaussian curvature of the space-filling diagram. We give a formula for the derivative of the weighted mean curvature. Together with the derivatives of the weighted volume in [7], the weighted area in [3], and the weighted Gaussian curvature [1], this yields the derivative of the morphometric expression of the solvation free energy.
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来源期刊
Computational and Mathematical Biophysics
Computational and Mathematical Biophysics Mathematics-Mathematical Physics
CiteScore
2.50
自引率
0.00%
发文量
8
审稿时长
30 weeks
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