从16S rRNA和COI线粒体基因推断苏门答腊南部奥干河KISSING GOURAMI(Helostoma temminckii Cuvier,1829)的遗传特征

Tuty Arisuryanti, G. Pratama, L. Hakim, J. P. Koentjana, F. K. Nazira
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引用次数: 3

摘要

吻gourami的遗传特征数据对于了解吻gourami的历史谱系、提高其物种的可持续性以及为其栖息地鱼类资源的可持续管理制定法规具有重要意义。然而,对印尼本土淡水鱼之一的吻gourami的遗传特征调查却知之甚少。因此,本研究的目的是利用16S rRNA和COI两个线粒体基因的部分序列来研究南苏门答腊岛Ogan河鱼类的遗传特征。结果表明,在16S rRNA基因测定的621 bp中,有5个位点是可变的,其中1个位点是简约性信息位点。串联数据显示3个单倍型,总单倍型多样性为0.833±0.222,核苷酸多样性为0.003±0.001。遗传分化范围为0 ~ 0.49%。COI基因全长609 bp,可翻译203个氨基酸。鱼类样本609bp序列显示3个单倍型,9个可变位点和2个简约性信息。单倍型多样性为0.833±0.22,核苷酸多样性为0.00794±0.0025。三个非同义密码子也支持鱼样本之间的单倍型差异。遗传差异在0 ~ 1.16%之间。结果表明,需要对吻gourami的遗传变异进行监测,并需要进一步的研究来比较来自不同地点的同一物种,以了解其历史谱系和人口统计学。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
GENETIC CHARACTERIZATION OF KISSING GOURAMI (Helostoma temminckii Cuvier, 1829) IN OGAN RIVER, SOUTH SUMATRA INFERRED FROM 16S rRNA AND COI MITOCHONDRIAL GENES
Genetic characterization data of kissing gourami are important to understand historical lineage thus enhancing sustainability of the species and to establish regulation for sustainable management of the fish stock in their habitat. However, investigation of genetic characterization of kissing gourami, one of native Indonesian freshwater fishes has poorly understood. Therefore, the aim of this study was to examine genetic characterization of the fish species collected from Ogan River, South Sumatra using partial sequences of two mitochondrial genes, 16S rRNA and COI. The results revealed that for the 621 bp determined in 16S rRNA gene of the samples, five sites were variable, of which one was parsimony informative. Concatenate data revealed three haplotypes with an overall haplotype diversity of 0.833±0.222 and nucleotide diversity of 0.003±0.001. The genetic divergence varied from 0-0.49%. Next, sequence analysis of COI gene exhibited 609 bp which can be translated into 203 amino acids. For the 609 bp sequence determined in the fish samples, three haplotypes were revealed with nine variable sites and two parsimony informatives. Haplotype diversity and nucleotide diversity of the fish samples were 0.833±0.22 and 0.00794±0.0025, respectively. The haplotype divergence between the fish samples was also supported by three nonsynonymous codons. In addition, the genetic divergence varied from 0 % to 1.16 %. The results suggest that genetic variation of the kissing gourami has to be monitored and further studies are needed to compare the same species from different location to know the historical lineage and demography.
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