Qeshm岛红树林沉积物中嗜盐和耐盐细菌的分离与鉴定

Q3 Earth and Planetary Sciences
P. Javid, Hassan Zadabbas Shahabadi, Homeyra Amirkhani, Narges Amrollahi, M. S. Ranjbar
{"title":"Qeshm岛红树林沉积物中嗜盐和耐盐细菌的分离与鉴定","authors":"P. Javid, Hassan Zadabbas Shahabadi, Homeyra Amirkhani, Narges Amrollahi, M. S. Ranjbar","doi":"10.4081/aiol.2020.8743","DOIUrl":null,"url":null,"abstract":"Due to specific environmental and ecological conditions, mangrove forests are known as marine transitional zones between sea and land, and, as such, they host organisms with high ecological plasticity. The mangrove forests of Qeshm Island (Iran) are relatively pristine habitats and represent an ideal target for investigating patterns of either aquatic or benthic biodiversity. To provide insights on microbial diversity in this area, nineteen halophilic and halotolerant bacteria were isolated from the sediments in 2017 during low tide. The extracted bacterial strains were studied morphologically by streaking, initial observation of colonies and bacterial staining, and characterized using a battery of biochemical tests including KOH, MR, VP, urease, TSI, S/I/M, Mac, LIA, ODC, ADH, oxidase, catalase, and tryptophan deaminase. The optimum growth of halophilic bacteria was observed in salt concentrations from 5 to 20% NaCl, whereas the extreme halophilic Gram-positive strain grew in salt concentration of up to 30% NaCl. Molecular analyses were also carried out on four halophilic strains and one extreme halophilic gram-positive bacteria. Phylogenetic taxonomy analysis, after 16S rDNA gene Sanger sequencing, revealed that the halophilic bacteria were closely related to the strain types of the genus Bacillus including Bacillus licheniformis, Bacillus velezensis, Bacillus Paralicheniformis and Bacillus sp. with 99% bootstrap value. The extreme halophilic strain was associated to strains of Planococcus plakortidis with 100% bootstrap value. No n-c om me rci al us e nly","PeriodicalId":37306,"journal":{"name":"Advances in Oceanography and Limnology","volume":" ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2020-05-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.4081/aiol.2020.8743","citationCount":"4","resultStr":"{\"title\":\"Isolation and identification of halophilic and halotolerant bacteria from the sediments of the Qeshm Island mangrove forest\",\"authors\":\"P. Javid, Hassan Zadabbas Shahabadi, Homeyra Amirkhani, Narges Amrollahi, M. S. Ranjbar\",\"doi\":\"10.4081/aiol.2020.8743\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Due to specific environmental and ecological conditions, mangrove forests are known as marine transitional zones between sea and land, and, as such, they host organisms with high ecological plasticity. The mangrove forests of Qeshm Island (Iran) are relatively pristine habitats and represent an ideal target for investigating patterns of either aquatic or benthic biodiversity. To provide insights on microbial diversity in this area, nineteen halophilic and halotolerant bacteria were isolated from the sediments in 2017 during low tide. The extracted bacterial strains were studied morphologically by streaking, initial observation of colonies and bacterial staining, and characterized using a battery of biochemical tests including KOH, MR, VP, urease, TSI, S/I/M, Mac, LIA, ODC, ADH, oxidase, catalase, and tryptophan deaminase. The optimum growth of halophilic bacteria was observed in salt concentrations from 5 to 20% NaCl, whereas the extreme halophilic Gram-positive strain grew in salt concentration of up to 30% NaCl. Molecular analyses were also carried out on four halophilic strains and one extreme halophilic gram-positive bacteria. Phylogenetic taxonomy analysis, after 16S rDNA gene Sanger sequencing, revealed that the halophilic bacteria were closely related to the strain types of the genus Bacillus including Bacillus licheniformis, Bacillus velezensis, Bacillus Paralicheniformis and Bacillus sp. with 99% bootstrap value. The extreme halophilic strain was associated to strains of Planococcus plakortidis with 100% bootstrap value. No n-c om me rci al us e nly\",\"PeriodicalId\":37306,\"journal\":{\"name\":\"Advances in Oceanography and Limnology\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-05-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.4081/aiol.2020.8743\",\"citationCount\":\"4\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Advances in Oceanography and Limnology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.4081/aiol.2020.8743\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"Earth and Planetary Sciences\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Advances in Oceanography and Limnology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.4081/aiol.2020.8743","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Earth and Planetary Sciences","Score":null,"Total":0}
引用次数: 4

摘要

由于特定的环境和生态条件,红树林被称为介于海洋和陆地之间的海洋过渡带,因此,它们是具有高生态可塑性的生物的宿主。Qeshm岛(伊朗)的红树林是相对原始的栖息地,是调查水生或底栖生物多样性模式的理想目标。为了深入了解该地区的微生物多样性,2017年退潮期间从沉积物中分离出19种嗜盐和耐盐细菌。通过划线、菌落的初步观察和细菌染色对提取的菌株进行形态学研究,并使用一系列生化测试进行表征,包括KOH、MR、VP、脲酶、TSI、S/I/M、Mac、LIA、ODC、ADH、氧化酶、过氧化氢酶和色氨酸脱氨酶。嗜盐细菌在5至20%NaCl的盐浓度下生长最适,而极端嗜盐革兰氏阳性菌株在高达30%NaCl的盐溶液中生长。还对四株嗜盐菌株和一株极端嗜盐革兰氏阳性菌进行了分子分析。经16S rDNA基因Sanger测序,系统发育分类学分析表明,嗜盐细菌与芽孢杆菌属的菌株类型密切相关,包括地衣芽孢杆菌、维勒岑芽孢杆菌、副地衣芽孢杆菌和芽孢杆菌属,具有99%的自举值。极端嗜盐菌株与具有100%自举值的平球菌菌株相关。没有任何商业活动
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Isolation and identification of halophilic and halotolerant bacteria from the sediments of the Qeshm Island mangrove forest
Due to specific environmental and ecological conditions, mangrove forests are known as marine transitional zones between sea and land, and, as such, they host organisms with high ecological plasticity. The mangrove forests of Qeshm Island (Iran) are relatively pristine habitats and represent an ideal target for investigating patterns of either aquatic or benthic biodiversity. To provide insights on microbial diversity in this area, nineteen halophilic and halotolerant bacteria were isolated from the sediments in 2017 during low tide. The extracted bacterial strains were studied morphologically by streaking, initial observation of colonies and bacterial staining, and characterized using a battery of biochemical tests including KOH, MR, VP, urease, TSI, S/I/M, Mac, LIA, ODC, ADH, oxidase, catalase, and tryptophan deaminase. The optimum growth of halophilic bacteria was observed in salt concentrations from 5 to 20% NaCl, whereas the extreme halophilic Gram-positive strain grew in salt concentration of up to 30% NaCl. Molecular analyses were also carried out on four halophilic strains and one extreme halophilic gram-positive bacteria. Phylogenetic taxonomy analysis, after 16S rDNA gene Sanger sequencing, revealed that the halophilic bacteria were closely related to the strain types of the genus Bacillus including Bacillus licheniformis, Bacillus velezensis, Bacillus Paralicheniformis and Bacillus sp. with 99% bootstrap value. The extreme halophilic strain was associated to strains of Planococcus plakortidis with 100% bootstrap value. No n-c om me rci al us e nly
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Advances in Oceanography and Limnology
Advances in Oceanography and Limnology Agricultural and Biological Sciences-Aquatic Science
CiteScore
2.00
自引率
0.00%
发文量
2
审稿时长
12 weeks
期刊介绍: Advances in Oceanography and Limnology was born in 2010 from the 35 years old Proceedings of the national congress of the Italian Association of Oceanology and Limnology. The AIOL Journal was funded as an interdisciplinary journal embracing both fundamental and applied Oceanographic and Limnological research, with focus on both single and multiple disciplines. Currently, two regular issues of the journal are published each year. In addition, Special Issues that focus on topics that are timely and of interest to a significant number of Limnologists and Oceanographers are also published. The journal, which is intended as an official publication of the AIOL, is also published in association with the EFFS (European Federation for Freshwater Sciences), which aims and objectives are directed towards the promotion of freshwater sciences throughout Europe. Starting from the 2015 issue, the AIOL Journal is published as an Open Access, peer-reviewed journal. Space is given to regular articles, review, short notes and opinion paper
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信