Ji Zhang, Qingyue Shen, Hanchen Miao, Qintong Li, Marie Shimada, Tian Yuan, M. Utsumi, Z. Lei, Zhenya Zhang, H. Takanashi, Naoshi Fujimoto, S. Ichise, Yasuhiro Asada, O. Nishimura, M. Akiba, K. Shimizu
{"title":"2-MIB产蓝细菌定量检测方法的建立","authors":"Ji Zhang, Qingyue Shen, Hanchen Miao, Qintong Li, Marie Shimada, Tian Yuan, M. Utsumi, Z. Lei, Zhenya Zhang, H. Takanashi, Naoshi Fujimoto, S. Ichise, Yasuhiro Asada, O. Nishimura, M. Akiba, K. Shimizu","doi":"10.4194/trjfas21811","DOIUrl":null,"url":null,"abstract":"Consumers often complain about taste and odor (T&O) in drinking water and freshwater fishery. One of the common T&O compounds, 2-methylisoborneol (2-MIB), can be detected by humans even when the concentration is below 10 ng/L. A forecast method of T&O occurrence is required to control drinking water plants and fishery farms to determine the timing of exchange of activated carbon or exchange the water in earthy pond. Traditional monitoring methods such as PCR, microscopy, and chemical analysis require a long time, are high in cost, and have a complex operation. We conducted this study to develop whole-cell PCR and whole-cell qPCR assays for rapid detection and quantification of 2-MIB-producing cyanobacteria without DNA extraction to detect 2-MIB cyclase gene (mtc). Pseudanabaena foetida strain 1705-12 (Lake Kasumigaura), strain 1803-12 (Lake Kasumigaura), and strain PTG (Lake Biwa) of 2-MIB-producing cyanobacteria were used in the study. The positive correlation between the results of whole-cell PCR, whole-cell qPCR and chlorophyll a (Chl.a), and gene abundances illustrated that whole-cell PCR and whole-cell qPCR assays could rapidly and conveniently detect and quantify 2-MIB-producing cyanobacteria. Thus, this study provides a valuable tool for prediction of T&O events in drinking water and freshwater fishery.","PeriodicalId":23978,"journal":{"name":"Turkish Journal of Fisheries and Aquatic Sciences","volume":" ","pages":""},"PeriodicalIF":1.5000,"publicationDate":"2022-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Development of a Quantification and Detection Method for 2-MIB-producing Cyanobacteria\",\"authors\":\"Ji Zhang, Qingyue Shen, Hanchen Miao, Qintong Li, Marie Shimada, Tian Yuan, M. Utsumi, Z. Lei, Zhenya Zhang, H. Takanashi, Naoshi Fujimoto, S. Ichise, Yasuhiro Asada, O. Nishimura, M. Akiba, K. Shimizu\",\"doi\":\"10.4194/trjfas21811\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Consumers often complain about taste and odor (T&O) in drinking water and freshwater fishery. One of the common T&O compounds, 2-methylisoborneol (2-MIB), can be detected by humans even when the concentration is below 10 ng/L. A forecast method of T&O occurrence is required to control drinking water plants and fishery farms to determine the timing of exchange of activated carbon or exchange the water in earthy pond. Traditional monitoring methods such as PCR, microscopy, and chemical analysis require a long time, are high in cost, and have a complex operation. We conducted this study to develop whole-cell PCR and whole-cell qPCR assays for rapid detection and quantification of 2-MIB-producing cyanobacteria without DNA extraction to detect 2-MIB cyclase gene (mtc). Pseudanabaena foetida strain 1705-12 (Lake Kasumigaura), strain 1803-12 (Lake Kasumigaura), and strain PTG (Lake Biwa) of 2-MIB-producing cyanobacteria were used in the study. The positive correlation between the results of whole-cell PCR, whole-cell qPCR and chlorophyll a (Chl.a), and gene abundances illustrated that whole-cell PCR and whole-cell qPCR assays could rapidly and conveniently detect and quantify 2-MIB-producing cyanobacteria. Thus, this study provides a valuable tool for prediction of T&O events in drinking water and freshwater fishery.\",\"PeriodicalId\":23978,\"journal\":{\"name\":\"Turkish Journal of Fisheries and Aquatic Sciences\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":1.5000,\"publicationDate\":\"2022-09-27\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Turkish Journal of Fisheries and Aquatic Sciences\",\"FirstCategoryId\":\"97\",\"ListUrlMain\":\"https://doi.org/10.4194/trjfas21811\",\"RegionNum\":4,\"RegionCategory\":\"农林科学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"FISHERIES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Turkish Journal of Fisheries and Aquatic Sciences","FirstCategoryId":"97","ListUrlMain":"https://doi.org/10.4194/trjfas21811","RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"FISHERIES","Score":null,"Total":0}
Development of a Quantification and Detection Method for 2-MIB-producing Cyanobacteria
Consumers often complain about taste and odor (T&O) in drinking water and freshwater fishery. One of the common T&O compounds, 2-methylisoborneol (2-MIB), can be detected by humans even when the concentration is below 10 ng/L. A forecast method of T&O occurrence is required to control drinking water plants and fishery farms to determine the timing of exchange of activated carbon or exchange the water in earthy pond. Traditional monitoring methods such as PCR, microscopy, and chemical analysis require a long time, are high in cost, and have a complex operation. We conducted this study to develop whole-cell PCR and whole-cell qPCR assays for rapid detection and quantification of 2-MIB-producing cyanobacteria without DNA extraction to detect 2-MIB cyclase gene (mtc). Pseudanabaena foetida strain 1705-12 (Lake Kasumigaura), strain 1803-12 (Lake Kasumigaura), and strain PTG (Lake Biwa) of 2-MIB-producing cyanobacteria were used in the study. The positive correlation between the results of whole-cell PCR, whole-cell qPCR and chlorophyll a (Chl.a), and gene abundances illustrated that whole-cell PCR and whole-cell qPCR assays could rapidly and conveniently detect and quantify 2-MIB-producing cyanobacteria. Thus, this study provides a valuable tool for prediction of T&O events in drinking water and freshwater fishery.
期刊介绍:
Turkish Journal of Fisheries and Aquatic Sciences" (TrJFAS) is a refereed academic journal has been published by Central Fisheries Research Institute of Turkey and Japan International Cooperation Agency (JICA), and published in English.
It aims to address research and needs of all working and studying within the many varied areas of fisheries and aquatic sciences.
The Journal publishes English language original research papers, critical review articles, short communications and technical notes on applied or scientific research relevant to freshwater, brackish and marine environments.
TrJFAS was published biannually (April & November) between 2001 and 2009. A great number of manuscripts have been submitted to the journal for review from acceptance of the SCI index. Thereby, the journal has been published quarterly (March, June, September and December) from 2010 to 2017. The journal will be published monthly in 2018.