利用srap和issr对利比亚栽培的一些杏仁基因型进行生物多样性评价

A. Abo-Doma, Marwa Mahmoud Shehata, Nahla El-Sherif, M. Ammar, K. Khar
{"title":"利用srap和issr对利比亚栽培的一些杏仁基因型进行生物多样性评价","authors":"A. Abo-Doma, Marwa Mahmoud Shehata, Nahla El-Sherif, M. Ammar, K. Khar","doi":"10.21608/EJGC.2018.9212","DOIUrl":null,"url":null,"abstract":"This work aimed to assess the biodiversity of eighteen almond genotypes grown in Libya on the bases of some agronomical, biochemical and molecular characteristics. The agronomical traits were: fruit length, fruit diameter, fruit fresh and dry weights, number of fruits/tree and total yield/tree. The biochemical traits were: total oil, linoleic acid and protein contents. In this context, it was very important to establish an accurate DNA fingerprints for cultivar characterization in order to identify the genetic diversity among these genotypes. For this purpose, 20 combinations of SRAP and 9 primers of ISSR molecular markers were applied to discriminate the 18 almond (Prunus Amygdalus, dulcis L.) genotypes. SRAP generated polymorphic and unique bands for all genotypes. SRAP generated 98 bands, out of these, 22 were common bands while 14 were unique ones used as molecular markers, eight bands out of these unique bands could be considered as positive markers and six as negative markers. ISSR generated 111 bands, out of which, there were three common bands and 19 unique ones, fourteen bands out of them could be considered as positive markers and five as negative markers for a particular genotype. Similarity indices generated shuffling in the arrangement in the cultivar relations according to the two used molecular techniques (SRAP and ISSR), as in SRAP, the two most closely related cultivars were Ansperabilla and Faccinado with similarity value of 0.819, while it was 0.683 between genotypes Ansperabilla and Faccinado as revealed from ISSR data. On the other hand, the two most distantly related cultivars, according to SRAP data, were Avola and Castilla, with similarity value of 0.423, while it was 0.184 between City Bianca and Castilla genotypes according to ISSR data. Dendrogram was conducted for the eighteen genotypes under investigation using the two used molecular techniques. The results revealed different distances in their genetic relationships among the eighteen almond genotypes under investigation.","PeriodicalId":31811,"journal":{"name":"Egyptian Journal of Genetics and Cytology","volume":" ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2018-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"2","resultStr":"{\"title\":\"BIODIVERSITY ASSESSMENT FOR SOME ALMOND GENOTYPES CULTIVATED IN LIBYA USING SRAP AND ISSR\",\"authors\":\"A. Abo-Doma, Marwa Mahmoud Shehata, Nahla El-Sherif, M. Ammar, K. Khar\",\"doi\":\"10.21608/EJGC.2018.9212\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"This work aimed to assess the biodiversity of eighteen almond genotypes grown in Libya on the bases of some agronomical, biochemical and molecular characteristics. The agronomical traits were: fruit length, fruit diameter, fruit fresh and dry weights, number of fruits/tree and total yield/tree. The biochemical traits were: total oil, linoleic acid and protein contents. In this context, it was very important to establish an accurate DNA fingerprints for cultivar characterization in order to identify the genetic diversity among these genotypes. For this purpose, 20 combinations of SRAP and 9 primers of ISSR molecular markers were applied to discriminate the 18 almond (Prunus Amygdalus, dulcis L.) genotypes. SRAP generated polymorphic and unique bands for all genotypes. SRAP generated 98 bands, out of these, 22 were common bands while 14 were unique ones used as molecular markers, eight bands out of these unique bands could be considered as positive markers and six as negative markers. ISSR generated 111 bands, out of which, there were three common bands and 19 unique ones, fourteen bands out of them could be considered as positive markers and five as negative markers for a particular genotype. Similarity indices generated shuffling in the arrangement in the cultivar relations according to the two used molecular techniques (SRAP and ISSR), as in SRAP, the two most closely related cultivars were Ansperabilla and Faccinado with similarity value of 0.819, while it was 0.683 between genotypes Ansperabilla and Faccinado as revealed from ISSR data. On the other hand, the two most distantly related cultivars, according to SRAP data, were Avola and Castilla, with similarity value of 0.423, while it was 0.184 between City Bianca and Castilla genotypes according to ISSR data. Dendrogram was conducted for the eighteen genotypes under investigation using the two used molecular techniques. The results revealed different distances in their genetic relationships among the eighteen almond genotypes under investigation.\",\"PeriodicalId\":31811,\"journal\":{\"name\":\"Egyptian Journal of Genetics and Cytology\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2018-01-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Egyptian Journal of Genetics and Cytology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.21608/EJGC.2018.9212\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Egyptian Journal of Genetics and Cytology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.21608/EJGC.2018.9212","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 2

摘要

本研究旨在从农艺、生化和分子生物学的角度对利比亚18个杏仁基因型的生物多样性进行评价。农艺性状为:果实长、果实直径、果实鲜重和干重、单株果数和单株总产量。生化指标为:总油、亚油酸和蛋白质含量。在此背景下,建立准确的DNA指纹图谱对品种鉴定具有重要意义。利用20个SRAP组合和9个ISSR分子标记引物对18个杏仁(Prunus Amygdalus, dulcis L.)基因型进行了鉴定。SRAP在所有基因型中产生多态性和独特的条带。SRAP共生成98条条带,其中22条为普通条带,14条为独特条带作为分子标记,其中8条为阳性标记,6条为阴性标记。ISSR共产生111条条带,其中3条共有条带和19条独特条带,其中14条可作为特定基因型的阳性标记,5条可作为特定基因型的阴性标记。两种分子技术(SRAP和ISSR)的相似性指数对品种关系的排列产生了混淆,SRAP中亲缘关系最密切的两个品种是Ansperabilla和Faccinado,相似值为0.819,而ISSR数据显示Ansperabilla和Faccinado基因型的相似值为0.683。另一方面,根据SRAP数据,亲缘关系最近的两个品种是Avola和Castilla,相似性值为0.423,而根据ISSR数据,城市比安卡与Castilla基因型的相似性值为0.184。采用两种分子技术对18个基因型进行了树图分析。结果表明,18个杏仁基因型的亲缘关系存在距离差异。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
BIODIVERSITY ASSESSMENT FOR SOME ALMOND GENOTYPES CULTIVATED IN LIBYA USING SRAP AND ISSR
This work aimed to assess the biodiversity of eighteen almond genotypes grown in Libya on the bases of some agronomical, biochemical and molecular characteristics. The agronomical traits were: fruit length, fruit diameter, fruit fresh and dry weights, number of fruits/tree and total yield/tree. The biochemical traits were: total oil, linoleic acid and protein contents. In this context, it was very important to establish an accurate DNA fingerprints for cultivar characterization in order to identify the genetic diversity among these genotypes. For this purpose, 20 combinations of SRAP and 9 primers of ISSR molecular markers were applied to discriminate the 18 almond (Prunus Amygdalus, dulcis L.) genotypes. SRAP generated polymorphic and unique bands for all genotypes. SRAP generated 98 bands, out of these, 22 were common bands while 14 were unique ones used as molecular markers, eight bands out of these unique bands could be considered as positive markers and six as negative markers. ISSR generated 111 bands, out of which, there were three common bands and 19 unique ones, fourteen bands out of them could be considered as positive markers and five as negative markers for a particular genotype. Similarity indices generated shuffling in the arrangement in the cultivar relations according to the two used molecular techniques (SRAP and ISSR), as in SRAP, the two most closely related cultivars were Ansperabilla and Faccinado with similarity value of 0.819, while it was 0.683 between genotypes Ansperabilla and Faccinado as revealed from ISSR data. On the other hand, the two most distantly related cultivars, according to SRAP data, were Avola and Castilla, with similarity value of 0.423, while it was 0.184 between City Bianca and Castilla genotypes according to ISSR data. Dendrogram was conducted for the eighteen genotypes under investigation using the two used molecular techniques. The results revealed different distances in their genetic relationships among the eighteen almond genotypes under investigation.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
审稿时长
12 weeks
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信