关于一般稀疏混合线性解的评价

IF 16.4 1区 化学 Q1 CHEMISTRY, MULTIDISCIPLINARY
Afrah Farea, M. S. Çelebi
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引用次数: 0

摘要

通用稀疏混合求解器是解决广泛科学和工程问题的常用内核。这项工作解决了当前在许多核心分布式集群上使用直接/迭代混合求解器有效求解一般稀疏线性方程的问题。我们简要讨论了大型稀疏线性系统的Maphys、HIPS和PDSL混合求解器的求解阶段及其主要算法差异。在这类求解器中,建议使用不同的方法和复杂的预处理算法来解决记忆和收敛之间的折衷问题。这样的解决方案需要一定的层次级并行性,更适合现代超级计算机,允许使用Schur互补框架扩展数千个处理器。我们研究了重新排序的影响,并使用不同实际应用中产生的大量具有挑战性的矩阵分析了PDSLin、Maphys和HIPS混合求解器每个求解阶段的性能、可扩展性和内存,并将结果与SuperLU_DIST直接求解器进行了比较。我们特别关注混合求解器使用的并行机制的级别以及对可伸缩性的影响。调优和分析实用程序(TAU)用于评估堆内存配置文件的有效使用情况和测量通信量。这些测试在使用多达512个处理器的高性能大型内存集群上运行。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
On the evaluation of general sparse hybrid linear solvers
General sparse hybrid solvers are commonly used kernels for solving wide range of scientific and engineering problems. This work addresses the current problems of efficiently solving general sparse linear equations with direct/iterative hybrid solvers on many core distributed clusters. We briefly discuss the solution stages of Maphys, HIPS, and PDSLin hybrid solvers for large sparse linear systems with their major algorithmic differences. In this category of solvers, different methods with sophisticated preconditioning algorithms are suggested to solve the trade off between memory and convergence. Such solutions require a certain hierarchical level of parallelism more suitable for modern supercomputers that allow to scale for thousand numbers of processors using Schur complement framework. We study the effect of reordering and analyze the performance, scalability as well as memory for each solve phase of PDSLin, Maphys, and HIPS hybrid solvers using large set of challenging matrices arising from different actual applications and compare the results with SuperLU_DIST direct solver. We specifically focus on the level of parallel mechanisms used by the hybrid solvers and the effect on scalability. Tuning and Analysis Utilities (TAU) is employed to assess the efficient usage of heap memory profile and measuring communication volume. The tests are run on high performance large memory clusters using up to 512 processors.
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来源期刊
Accounts of Chemical Research
Accounts of Chemical Research 化学-化学综合
CiteScore
31.40
自引率
1.10%
发文量
312
审稿时长
2 months
期刊介绍: Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance. Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.
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