对侧和同侧脑半球放射学特征预测胶质瘤遗传标记

Nicholas C. Wang , Johann Gagnon-Bartsch , Ashok Srinivasan , Michelle M. Kim , Douglas C. Noll , Arvind Rao
{"title":"对侧和同侧脑半球放射学特征预测胶质瘤遗传标记","authors":"Nicholas C. Wang ,&nbsp;Johann Gagnon-Bartsch ,&nbsp;Ashok Srinivasan ,&nbsp;Michelle M. Kim ,&nbsp;Douglas C. Noll ,&nbsp;Arvind Rao","doi":"10.1016/j.neuri.2023.100116","DOIUrl":null,"url":null,"abstract":"<div><p>Purpose: Radiomic features of gliomas are often used to predict genetic markers from radiological studies. Radiomic features were extracted from the contralateral brain to test if tumor texture is driving the predictive power of machine learning models. Ideally, these contralateral models would be a negative control for tumor radiomics models, since many studies use contralateral normal appearing white matter for normalization. This study used those features to attempt to predict IDH mutation status, MGMT promoter methylation, TERT promoter mutation, and ATRX mutation status with random forests.</p><p>Methods: Radiomic features were extracted from the tumor region, a mirrored contralateral region, a spherical region within the tumor, a spherical region on the contralateral, and a spherical sample of the ipsilateral side. These features were used independently to predict IDH, MGMT, TERT, and ATRX using random forests.</p><p>Main Findings: Contralateral features alone were as predictive of IDH mutation status as tumor features and had predictive power for several genetic markers.</p><p>Conclusion: Normalization with contralateral brain should be done carefully, and further investigation of potential radiological changes to the contralateral is warranted.</p></div>","PeriodicalId":74295,"journal":{"name":"Neuroscience informatics","volume":"3 2","pages":"Article 100116"},"PeriodicalIF":0.0000,"publicationDate":"2023-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Radiomic features of contralateral and ipsilateral hemispheres for prediction of glioma genetic markers\",\"authors\":\"Nicholas C. Wang ,&nbsp;Johann Gagnon-Bartsch ,&nbsp;Ashok Srinivasan ,&nbsp;Michelle M. Kim ,&nbsp;Douglas C. Noll ,&nbsp;Arvind Rao\",\"doi\":\"10.1016/j.neuri.2023.100116\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>Purpose: Radiomic features of gliomas are often used to predict genetic markers from radiological studies. Radiomic features were extracted from the contralateral brain to test if tumor texture is driving the predictive power of machine learning models. Ideally, these contralateral models would be a negative control for tumor radiomics models, since many studies use contralateral normal appearing white matter for normalization. This study used those features to attempt to predict IDH mutation status, MGMT promoter methylation, TERT promoter mutation, and ATRX mutation status with random forests.</p><p>Methods: Radiomic features were extracted from the tumor region, a mirrored contralateral region, a spherical region within the tumor, a spherical region on the contralateral, and a spherical sample of the ipsilateral side. These features were used independently to predict IDH, MGMT, TERT, and ATRX using random forests.</p><p>Main Findings: Contralateral features alone were as predictive of IDH mutation status as tumor features and had predictive power for several genetic markers.</p><p>Conclusion: Normalization with contralateral brain should be done carefully, and further investigation of potential radiological changes to the contralateral is warranted.</p></div>\",\"PeriodicalId\":74295,\"journal\":{\"name\":\"Neuroscience informatics\",\"volume\":\"3 2\",\"pages\":\"Article 100116\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-06-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Neuroscience informatics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2772528623000018\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Neuroscience informatics","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2772528623000018","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

目的:神经胶质瘤的放射组学特征常用于预测放射学研究中的遗传标记。从对侧大脑中提取放射学特征,以测试肿瘤纹理是否驱动机器学习模型的预测能力。理想情况下,这些对侧模型将是肿瘤放射组学模型的阴性对照,因为许多研究使用对侧正常出现的白质进行归一化。本研究利用这些特征来预测IDH突变状态、MGMT启动子甲基化、TERT启动子突变和ATRX随机森林突变状态。方法:提取肿瘤区域、对侧镜像区域、肿瘤内球形区域、对侧球形区域和同侧球形样本的放射学特征。这些特征被独立地用于使用随机森林预测IDH、MGMT、TERT和ATRX。主要发现:仅对侧特征与肿瘤特征一样可预测IDH突变状态,并且对几种遗传标记具有预测能力。结论:对侧脑组织应仔细进行正常化,并进一步调查对侧潜在的放射学改变是有必要的。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Radiomic features of contralateral and ipsilateral hemispheres for prediction of glioma genetic markers

Purpose: Radiomic features of gliomas are often used to predict genetic markers from radiological studies. Radiomic features were extracted from the contralateral brain to test if tumor texture is driving the predictive power of machine learning models. Ideally, these contralateral models would be a negative control for tumor radiomics models, since many studies use contralateral normal appearing white matter for normalization. This study used those features to attempt to predict IDH mutation status, MGMT promoter methylation, TERT promoter mutation, and ATRX mutation status with random forests.

Methods: Radiomic features were extracted from the tumor region, a mirrored contralateral region, a spherical region within the tumor, a spherical region on the contralateral, and a spherical sample of the ipsilateral side. These features were used independently to predict IDH, MGMT, TERT, and ATRX using random forests.

Main Findings: Contralateral features alone were as predictive of IDH mutation status as tumor features and had predictive power for several genetic markers.

Conclusion: Normalization with contralateral brain should be done carefully, and further investigation of potential radiological changes to the contralateral is warranted.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Neuroscience informatics
Neuroscience informatics Surgery, Radiology and Imaging, Information Systems, Neurology, Artificial Intelligence, Computer Science Applications, Signal Processing, Critical Care and Intensive Care Medicine, Health Informatics, Clinical Neurology, Pathology and Medical Technology
自引率
0.00%
发文量
0
审稿时长
57 days
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信