数据挖掘方法强调了在热启动中发挥作用的转录因子

Q3 Agricultural and Biological Sciences
F. Izadi, H. N. Zarrini, G. Kiani, N. B. Jelodar
{"title":"数据挖掘方法强调了在热启动中发挥作用的转录因子","authors":"F. Izadi, H. N. Zarrini, G. Kiani, N. B. Jelodar","doi":"10.21475/POJ.10.03.17.PNE468","DOIUrl":null,"url":null,"abstract":"Abiotic stresses including heat are major threats to crop plants especially considering the global warming facts. A pre-exposure to heat stress can prime plants and enable them to encounter a severe dose of stress which is lethal to unprimed plants. In this study, in order to identifying potential key elements involved in priming responses to heat stress we analyzed a microarray series in Arabidopsis thaliana. To this end we conducted differential expression analysis, clustering, annotation and network construction by using the publicly available tools. In agreement with experimentally validated results we noticed that different genes were differentially expressed between primed and unprimed plants from which genes encoding retro-elements and proteins involved in chromatin remodeling were noteworthy. The topology analysis of constructed network highlighted the role of TFs including zinc finger and DREB in heat acclimation after priming phase. A total of 33 transcription factors were differentially expressed in primed versus unprimed plants five of which were detected to be hub and bottleneck nodes in genes network that may play a role in heat stress priming and memory additionally as potential targets to discover new insights to improve stress resistance in crop plants.","PeriodicalId":54602,"journal":{"name":"Plant Omics","volume":"10 1","pages":"139-145"},"PeriodicalIF":0.0000,"publicationDate":"2017-05-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"7","resultStr":"{\"title\":\"Data mining approaches highlighted transcription factors that play role in thermo-priming\",\"authors\":\"F. Izadi, H. N. Zarrini, G. Kiani, N. B. Jelodar\",\"doi\":\"10.21475/POJ.10.03.17.PNE468\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Abiotic stresses including heat are major threats to crop plants especially considering the global warming facts. A pre-exposure to heat stress can prime plants and enable them to encounter a severe dose of stress which is lethal to unprimed plants. In this study, in order to identifying potential key elements involved in priming responses to heat stress we analyzed a microarray series in Arabidopsis thaliana. To this end we conducted differential expression analysis, clustering, annotation and network construction by using the publicly available tools. In agreement with experimentally validated results we noticed that different genes were differentially expressed between primed and unprimed plants from which genes encoding retro-elements and proteins involved in chromatin remodeling were noteworthy. The topology analysis of constructed network highlighted the role of TFs including zinc finger and DREB in heat acclimation after priming phase. A total of 33 transcription factors were differentially expressed in primed versus unprimed plants five of which were detected to be hub and bottleneck nodes in genes network that may play a role in heat stress priming and memory additionally as potential targets to discover new insights to improve stress resistance in crop plants.\",\"PeriodicalId\":54602,\"journal\":{\"name\":\"Plant Omics\",\"volume\":\"10 1\",\"pages\":\"139-145\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2017-05-20\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"7\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Plant Omics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.21475/POJ.10.03.17.PNE468\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"Agricultural and Biological Sciences\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Plant Omics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.21475/POJ.10.03.17.PNE468","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Agricultural and Biological Sciences","Score":null,"Total":0}
引用次数: 7

摘要

包括热在内的非生物胁迫是农作物的主要威胁,特别是考虑到全球变暖的事实。预暴露于热胁迫可以使植物处于初始状态,并使它们能够遇到严重剂量的胁迫,这对未初始的植物是致命的。在这项研究中,我们分析了拟南芥的微阵列序列,以确定参与热胁迫启动反应的潜在关键因素。为此,我们利用公开的工具进行了差异表达分析、聚类、标注和网络构建。与实验验证的结果一致,我们注意到不同基因在引物和未引物植物之间的差异表达,其中编码逆转录因子和参与染色质重塑的蛋白质的基因值得注意。构建网络的拓扑分析突出了锌指和DREB等tf在启动期后热驯化中的作用。共有33个转录因子在引物与未引物植物中差异表达,其中5个被检测到是基因网络中的枢纽和瓶颈节点,这些节点可能在热胁迫启动和记忆中发挥作用,此外还可能作为潜在靶点,发现提高作物植物抗逆性的新见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Data mining approaches highlighted transcription factors that play role in thermo-priming
Abiotic stresses including heat are major threats to crop plants especially considering the global warming facts. A pre-exposure to heat stress can prime plants and enable them to encounter a severe dose of stress which is lethal to unprimed plants. In this study, in order to identifying potential key elements involved in priming responses to heat stress we analyzed a microarray series in Arabidopsis thaliana. To this end we conducted differential expression analysis, clustering, annotation and network construction by using the publicly available tools. In agreement with experimentally validated results we noticed that different genes were differentially expressed between primed and unprimed plants from which genes encoding retro-elements and proteins involved in chromatin remodeling were noteworthy. The topology analysis of constructed network highlighted the role of TFs including zinc finger and DREB in heat acclimation after priming phase. A total of 33 transcription factors were differentially expressed in primed versus unprimed plants five of which were detected to be hub and bottleneck nodes in genes network that may play a role in heat stress priming and memory additionally as potential targets to discover new insights to improve stress resistance in crop plants.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Plant Omics
Plant Omics 生物-植物科学
CiteScore
1.30
自引率
0.00%
发文量
0
审稿时长
6 months
期刊介绍: Plant OMICS is an international, peer-reviewed publication that gathers and disseminates fundamental and applied knowledge in almost all area of molecular plant and animal biology, particularly OMICS-es including: Coverage extends to the most corners of plant and animal biology, including molecular biology, genetics, functional and non-functional molecular breeding and physiology, developmental biology, and new technologies such as vaccines. This journal also covers the combination of many areas of molecular plant and animal biology. Plant Omics is also exteremely interested in molecular aspects of stress biology in plants and animals, including molecular physiology.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信