{"title":"机器学习辅助研究了过渡态后分岔与双峰过渡态初始相位信息之间的相关性","authors":"Tatsuhiro Murakami, Yuya Kikuma, Shunichi Ibuki, Naoki Matsumoto, Kanon Ogino, Yu Hashimoto, Toshiyuki Takayanagi","doi":"10.1002/poc.4561","DOIUrl":null,"url":null,"abstract":"<p>The Diels–Alder cycloaddition of cyclopentadiene and nitroethene, the intramolecular cycloaddition between a diene and triene, and the Diels–Alder cycloaddition of 2-hydroxyacrolein with 1,3-butadiene involving post-transition-state bifurcation (PTSB) were studied. These cycloaddition reactions were investigated using quasi-classical trajectory (QCT), classical molecular dynamics (MD), ring-polymer molecular dynamics (RPMD) simulations, and supervised machine-learning binary classification techniques. Room-temperature dynamics simulations started from the ambimodal transition state (TS) using the QCT, classical MD, and RPMD methods presented similar dynamics. Binary classification revealed that the initial geometry displacement from the ambimodal TS for the Diels–Alder cycloaddition of cyclopentadiene and nitroethene contributed to the branching dynamics and that the initial momenta for the intramolecular cycloaddition between a diene and triene and the Diels–Alder cycloaddition of 2-hydroxyacrolein with 1,3-butadiene played a significant role in the bifurcation dynamics.</p>","PeriodicalId":16829,"journal":{"name":"Journal of Physical Organic Chemistry","volume":null,"pages":null},"PeriodicalIF":1.9000,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/poc.4561","citationCount":"0","resultStr":"{\"title\":\"Machine learning-assisted study of correlation between post-transition-state bifurcation and initial phase information at the ambimodal transition state\",\"authors\":\"Tatsuhiro Murakami, Yuya Kikuma, Shunichi Ibuki, Naoki Matsumoto, Kanon Ogino, Yu Hashimoto, Toshiyuki Takayanagi\",\"doi\":\"10.1002/poc.4561\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>The Diels–Alder cycloaddition of cyclopentadiene and nitroethene, the intramolecular cycloaddition between a diene and triene, and the Diels–Alder cycloaddition of 2-hydroxyacrolein with 1,3-butadiene involving post-transition-state bifurcation (PTSB) were studied. These cycloaddition reactions were investigated using quasi-classical trajectory (QCT), classical molecular dynamics (MD), ring-polymer molecular dynamics (RPMD) simulations, and supervised machine-learning binary classification techniques. Room-temperature dynamics simulations started from the ambimodal transition state (TS) using the QCT, classical MD, and RPMD methods presented similar dynamics. Binary classification revealed that the initial geometry displacement from the ambimodal TS for the Diels–Alder cycloaddition of cyclopentadiene and nitroethene contributed to the branching dynamics and that the initial momenta for the intramolecular cycloaddition between a diene and triene and the Diels–Alder cycloaddition of 2-hydroxyacrolein with 1,3-butadiene played a significant role in the bifurcation dynamics.</p>\",\"PeriodicalId\":16829,\"journal\":{\"name\":\"Journal of Physical Organic Chemistry\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":1.9000,\"publicationDate\":\"2023-08-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://onlinelibrary.wiley.com/doi/epdf/10.1002/poc.4561\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Physical Organic Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://onlinelibrary.wiley.com/doi/10.1002/poc.4561\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"CHEMISTRY, ORGANIC\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Physical Organic Chemistry","FirstCategoryId":"92","ListUrlMain":"https://onlinelibrary.wiley.com/doi/10.1002/poc.4561","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"CHEMISTRY, ORGANIC","Score":null,"Total":0}
Machine learning-assisted study of correlation between post-transition-state bifurcation and initial phase information at the ambimodal transition state
The Diels–Alder cycloaddition of cyclopentadiene and nitroethene, the intramolecular cycloaddition between a diene and triene, and the Diels–Alder cycloaddition of 2-hydroxyacrolein with 1,3-butadiene involving post-transition-state bifurcation (PTSB) were studied. These cycloaddition reactions were investigated using quasi-classical trajectory (QCT), classical molecular dynamics (MD), ring-polymer molecular dynamics (RPMD) simulations, and supervised machine-learning binary classification techniques. Room-temperature dynamics simulations started from the ambimodal transition state (TS) using the QCT, classical MD, and RPMD methods presented similar dynamics. Binary classification revealed that the initial geometry displacement from the ambimodal TS for the Diels–Alder cycloaddition of cyclopentadiene and nitroethene contributed to the branching dynamics and that the initial momenta for the intramolecular cycloaddition between a diene and triene and the Diels–Alder cycloaddition of 2-hydroxyacrolein with 1,3-butadiene played a significant role in the bifurcation dynamics.
期刊介绍:
The Journal of Physical Organic Chemistry is the foremost international journal devoted to the relationship between molecular structure and chemical reactivity in organic systems. It publishes Research Articles, Reviews and Mini Reviews based on research striving to understand the principles governing chemical structures in relation to activity and transformation with physical and mathematical rigor, using results derived from experimental and computational methods. Physical Organic Chemistry is a central and fundamental field with multiple applications in fields such as molecular recognition, supramolecular chemistry, catalysis, photochemistry, biological and material sciences, nanotechnology and surface science.