Baoqi Zhao, Fei Yu, Junmei Sun, Xiumei Li, L. Yuan, Lei Xiao
{"title":"结合密集连接块和自注意机制的腺细胞分割方法","authors":"Baoqi Zhao, Fei Yu, Junmei Sun, Xiumei Li, L. Yuan, Lei Xiao","doi":"10.3724/sp.j.1089.2021.18625","DOIUrl":null,"url":null,"abstract":"Currently used cell segmentation methods are easily to cause the problem of missegmentation and impreciseness for glandular cell segmentation. A glandular cell segmentation model based on U-Net network is proposed which combines dense connective blocks and self-attention mechanism. Firstly, the convolution layers in the U-Net structure are combined to form the dense connective blocks, so that the information can be extracted from the image at different scales. Then the self-attention mechanism is introduced at the decoder to establish a rich context-dependent model for local features to suppress unnecessary feature propagation and improve the accuracy of glandular cell segmentation. The experimental results on the 2015 MICCAI Gland Segmentation Challenge dataset show that the proposed model, with a small number of extra parameters, can achieve improved performance in terms of F1-score, Mean Dice coefficient, and Hausdorff distance compared with other U-Net based methods.","PeriodicalId":52442,"journal":{"name":"计算机辅助设计与图形学学报","volume":" ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2021-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Glandular Cell Segmentation Method Combined with Dense Connective Blocks and Self-Attention Mechanism\",\"authors\":\"Baoqi Zhao, Fei Yu, Junmei Sun, Xiumei Li, L. Yuan, Lei Xiao\",\"doi\":\"10.3724/sp.j.1089.2021.18625\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Currently used cell segmentation methods are easily to cause the problem of missegmentation and impreciseness for glandular cell segmentation. A glandular cell segmentation model based on U-Net network is proposed which combines dense connective blocks and self-attention mechanism. Firstly, the convolution layers in the U-Net structure are combined to form the dense connective blocks, so that the information can be extracted from the image at different scales. Then the self-attention mechanism is introduced at the decoder to establish a rich context-dependent model for local features to suppress unnecessary feature propagation and improve the accuracy of glandular cell segmentation. The experimental results on the 2015 MICCAI Gland Segmentation Challenge dataset show that the proposed model, with a small number of extra parameters, can achieve improved performance in terms of F1-score, Mean Dice coefficient, and Hausdorff distance compared with other U-Net based methods.\",\"PeriodicalId\":52442,\"journal\":{\"name\":\"计算机辅助设计与图形学学报\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2021-07-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"计算机辅助设计与图形学学报\",\"FirstCategoryId\":\"1093\",\"ListUrlMain\":\"https://doi.org/10.3724/sp.j.1089.2021.18625\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"Computer Science\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"计算机辅助设计与图形学学报","FirstCategoryId":"1093","ListUrlMain":"https://doi.org/10.3724/sp.j.1089.2021.18625","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"Computer Science","Score":null,"Total":0}
Glandular Cell Segmentation Method Combined with Dense Connective Blocks and Self-Attention Mechanism
Currently used cell segmentation methods are easily to cause the problem of missegmentation and impreciseness for glandular cell segmentation. A glandular cell segmentation model based on U-Net network is proposed which combines dense connective blocks and self-attention mechanism. Firstly, the convolution layers in the U-Net structure are combined to form the dense connective blocks, so that the information can be extracted from the image at different scales. Then the self-attention mechanism is introduced at the decoder to establish a rich context-dependent model for local features to suppress unnecessary feature propagation and improve the accuracy of glandular cell segmentation. The experimental results on the 2015 MICCAI Gland Segmentation Challenge dataset show that the proposed model, with a small number of extra parameters, can achieve improved performance in terms of F1-score, Mean Dice coefficient, and Hausdorff distance compared with other U-Net based methods.