Laura D. Steele , Weilin Sun , M. Carmen Valero , James Adebayo Ojo , Keon Mook Seong , Brad S. Coates , Venu M. Margam , Manuele Tamò , Barry R. Pittendrigh
{"title":"棕色吸荚虫Clavigralla comtosicolis Stäl的有丝分裂基因组(半翅目:Coreidae)","authors":"Laura D. Steele , Weilin Sun , M. Carmen Valero , James Adebayo Ojo , Keon Mook Seong , Brad S. Coates , Venu M. Margam , Manuele Tamò , Barry R. Pittendrigh","doi":"10.1016/j.aggene.2017.07.002","DOIUrl":null,"url":null,"abstract":"<div><p>The brown pod-sucking bug, <em>Clavigralla tomentosicollis</em> Stäl (Hemiptera: Coreidae), causes significant damage to cultivated cowpea, <em>Vigna unguiculata</em> Walp, a staple crop in sub-Saharan Africa. <em>C. tomentosicollis</em> pierce and suck sap from cowpea pods, resulting in reduced grain yield and quality. The complete, 16,089<!--> <!-->bp mitogenome of <em>C. tomentosicollis</em> encodes 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs) and an A<!--> <!-->+<!--> <!-->T rich control region, with gene order and orientation identical to that of the insect ancestral gene order. The initiation and termination codons for the PCGs used standard ATN codons and TAA or TAG codons respectively. All predicted tRNAs fold into a clover-leaf secondary structures with the exception of tRNA-Ser (AGN) with a semi-loop dihydrouridine arm. The 1509<!--> <!-->bps A<!--> <!-->+<!--> <!-->T rich region contains a single 89<!--> <!-->bp tandem repeat unit duplicated 3.7 times. When compared with other published Coreoidea mitogenomes, <em>C. tomentosicollis</em> was also highly A<!--> <!-->−<!--> <!-->T skewed, and similar in both size and A<!--> <!-->−<!--> <!-->T%; however, its longer tandem repeat within the A<!--> <!-->+<!--> <!-->T rich region was unique. The <em>C. tomentosicollis</em> mitogenome can serve as a foundation to combine molecular marker data with pest monitoring strategies to better understand the population dynamics of this species.</p></div>","PeriodicalId":37751,"journal":{"name":"Agri Gene","volume":"5 ","pages":"Pages 27-36"},"PeriodicalIF":0.0000,"publicationDate":"2017-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.aggene.2017.07.002","citationCount":"3","resultStr":"{\"title\":\"The mitogenome of the brown pod-sucking bug Clavigralla tomentosicollis Stäl (Hemiptera: Coreidae)\",\"authors\":\"Laura D. Steele , Weilin Sun , M. Carmen Valero , James Adebayo Ojo , Keon Mook Seong , Brad S. Coates , Venu M. Margam , Manuele Tamò , Barry R. Pittendrigh\",\"doi\":\"10.1016/j.aggene.2017.07.002\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The brown pod-sucking bug, <em>Clavigralla tomentosicollis</em> Stäl (Hemiptera: Coreidae), causes significant damage to cultivated cowpea, <em>Vigna unguiculata</em> Walp, a staple crop in sub-Saharan Africa. <em>C. tomentosicollis</em> pierce and suck sap from cowpea pods, resulting in reduced grain yield and quality. The complete, 16,089<!--> <!-->bp mitogenome of <em>C. tomentosicollis</em> encodes 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs) and an A<!--> <!-->+<!--> <!-->T rich control region, with gene order and orientation identical to that of the insect ancestral gene order. The initiation and termination codons for the PCGs used standard ATN codons and TAA or TAG codons respectively. All predicted tRNAs fold into a clover-leaf secondary structures with the exception of tRNA-Ser (AGN) with a semi-loop dihydrouridine arm. The 1509<!--> <!-->bps A<!--> <!-->+<!--> <!-->T rich region contains a single 89<!--> <!-->bp tandem repeat unit duplicated 3.7 times. When compared with other published Coreoidea mitogenomes, <em>C. tomentosicollis</em> was also highly A<!--> <!-->−<!--> <!-->T skewed, and similar in both size and A<!--> <!-->−<!--> <!-->T%; however, its longer tandem repeat within the A<!--> <!-->+<!--> <!-->T rich region was unique. The <em>C. tomentosicollis</em> mitogenome can serve as a foundation to combine molecular marker data with pest monitoring strategies to better understand the population dynamics of this species.</p></div>\",\"PeriodicalId\":37751,\"journal\":{\"name\":\"Agri Gene\",\"volume\":\"5 \",\"pages\":\"Pages 27-36\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2017-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1016/j.aggene.2017.07.002\",\"citationCount\":\"3\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Agri Gene\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2352215117300119\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"Agricultural and Biological Sciences\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Agri Gene","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2352215117300119","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Agricultural and Biological Sciences","Score":null,"Total":0}
The mitogenome of the brown pod-sucking bug Clavigralla tomentosicollis Stäl (Hemiptera: Coreidae)
The brown pod-sucking bug, Clavigralla tomentosicollis Stäl (Hemiptera: Coreidae), causes significant damage to cultivated cowpea, Vigna unguiculata Walp, a staple crop in sub-Saharan Africa. C. tomentosicollis pierce and suck sap from cowpea pods, resulting in reduced grain yield and quality. The complete, 16,089 bp mitogenome of C. tomentosicollis encodes 13 protein-coding genes (PCGs), 22 transfer RNAs (tRNAs), two ribosomal RNAs (rRNAs) and an A + T rich control region, with gene order and orientation identical to that of the insect ancestral gene order. The initiation and termination codons for the PCGs used standard ATN codons and TAA or TAG codons respectively. All predicted tRNAs fold into a clover-leaf secondary structures with the exception of tRNA-Ser (AGN) with a semi-loop dihydrouridine arm. The 1509 bps A + T rich region contains a single 89 bp tandem repeat unit duplicated 3.7 times. When compared with other published Coreoidea mitogenomes, C. tomentosicollis was also highly A − T skewed, and similar in both size and A − T%; however, its longer tandem repeat within the A + T rich region was unique. The C. tomentosicollis mitogenome can serve as a foundation to combine molecular marker data with pest monitoring strategies to better understand the population dynamics of this species.
Agri GeneAgricultural and Biological Sciences-Agricultural and Biological Sciences (miscellaneous)
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期刊介绍:
Agri Gene publishes papers that focus on the regulation, expression, function and evolution of genes in crop plants, farm animals, and agriculturally important insects and microorganisms. Agri Gene strives to be a diverse journal and topics in multiple fields will be considered for publication so long as their main focus is on agriculturally important organisms (plants, animals, insects, or microorganisms). Although not limited to the following, some examples of potential topics include: Gene discovery and characterization. Genetic markers to guide traditional breeding. Genetic effects of transposable elements. Evolutionary genetics, molecular evolution, population genetics, and phylogenetics. Profiling of gene expression and genetic variation. Biotechnology and crop or livestock improvement. Genetic improvement of biological control microorganisms. Genetic control of secondary metabolic pathways and metabolic enzymes of crop pathogens. Transcription analysis of beneficial or pest insect developmental stages Agri Gene encourages submission of novel manuscripts that present a reasonable level of analysis, functional relevance and/or mechanistic insight. Agri Gene also welcomes papers that have predominantly a descriptive component but improve the essential basis of knowledge for subsequent functional studies, or which provide important confirmation of recently published discoveries provided that the information is new.