{"title":"黄蝴蝶兰凝集素基因的进化","authors":"Kazuki Sasaki , Kazuo Umetsu , Takashi Kitano","doi":"10.1016/j.aggene.2019.100098","DOIUrl":null,"url":null,"abstract":"<div><p>The larva of the Japanese buff-tip moth (<em>Phalera flavescens</em>) has a novel <em>N</em>-acetyllactosamine-binding lectin, termed <em>Phalera flavescens</em> agglutinin (PFA). It has been suggested that the <em>PFA</em> gene evolved from a lysozyme gene through the loss of lysozyme activity sites. In this study, we investigated whether the <em>PFA</em> gene is evolving through positive selection or by relaxation of functional constraint. For this purpose, we sequenced several <em>PFA</em>-orthologous genes from <em>P. assimilis</em>, <em>P. takasagoensis</em>, and <em>P. bucephala</em>, and compared synonymous and non-synonymous changes to examine the state of natural selection. Although a number of non-synonymous changes were observed on several branches of the gene tree, these effects may have been caused by relaxation of a functional constraint rather than a mechanism of positive selection. Therefore, it is reasonable to conclude that a lysozyme gene in the common ancestor of the <em>Phalera</em> (genus) species lost its lysozyme activity and accumulated mutations during the evolution of the species. Although the actual function of PFA in the moth species is as yet unknown, the gene probably obtained the <em>N</em>-acetyllactosamine-specific lectin activity, collaterally.</p></div>","PeriodicalId":37751,"journal":{"name":"Agri Gene","volume":"15 ","pages":"Article 100098"},"PeriodicalIF":0.0000,"publicationDate":"2020-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/j.aggene.2019.100098","citationCount":"2","resultStr":"{\"title\":\"Evolution of the gene of the lectin, Phalera flavescens agglutinin (PFA)\",\"authors\":\"Kazuki Sasaki , Kazuo Umetsu , Takashi Kitano\",\"doi\":\"10.1016/j.aggene.2019.100098\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The larva of the Japanese buff-tip moth (<em>Phalera flavescens</em>) has a novel <em>N</em>-acetyllactosamine-binding lectin, termed <em>Phalera flavescens</em> agglutinin (PFA). It has been suggested that the <em>PFA</em> gene evolved from a lysozyme gene through the loss of lysozyme activity sites. In this study, we investigated whether the <em>PFA</em> gene is evolving through positive selection or by relaxation of functional constraint. For this purpose, we sequenced several <em>PFA</em>-orthologous genes from <em>P. assimilis</em>, <em>P. takasagoensis</em>, and <em>P. bucephala</em>, and compared synonymous and non-synonymous changes to examine the state of natural selection. Although a number of non-synonymous changes were observed on several branches of the gene tree, these effects may have been caused by relaxation of a functional constraint rather than a mechanism of positive selection. Therefore, it is reasonable to conclude that a lysozyme gene in the common ancestor of the <em>Phalera</em> (genus) species lost its lysozyme activity and accumulated mutations during the evolution of the species. Although the actual function of PFA in the moth species is as yet unknown, the gene probably obtained the <em>N</em>-acetyllactosamine-specific lectin activity, collaterally.</p></div>\",\"PeriodicalId\":37751,\"journal\":{\"name\":\"Agri Gene\",\"volume\":\"15 \",\"pages\":\"Article 100098\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-03-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1016/j.aggene.2019.100098\",\"citationCount\":\"2\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Agri Gene\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2352215119300182\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"Agricultural and Biological Sciences\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Agri Gene","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2352215119300182","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"Agricultural and Biological Sciences","Score":null,"Total":0}
Evolution of the gene of the lectin, Phalera flavescens agglutinin (PFA)
The larva of the Japanese buff-tip moth (Phalera flavescens) has a novel N-acetyllactosamine-binding lectin, termed Phalera flavescens agglutinin (PFA). It has been suggested that the PFA gene evolved from a lysozyme gene through the loss of lysozyme activity sites. In this study, we investigated whether the PFA gene is evolving through positive selection or by relaxation of functional constraint. For this purpose, we sequenced several PFA-orthologous genes from P. assimilis, P. takasagoensis, and P. bucephala, and compared synonymous and non-synonymous changes to examine the state of natural selection. Although a number of non-synonymous changes were observed on several branches of the gene tree, these effects may have been caused by relaxation of a functional constraint rather than a mechanism of positive selection. Therefore, it is reasonable to conclude that a lysozyme gene in the common ancestor of the Phalera (genus) species lost its lysozyme activity and accumulated mutations during the evolution of the species. Although the actual function of PFA in the moth species is as yet unknown, the gene probably obtained the N-acetyllactosamine-specific lectin activity, collaterally.
Agri GeneAgricultural and Biological Sciences-Agricultural and Biological Sciences (miscellaneous)
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Agri Gene publishes papers that focus on the regulation, expression, function and evolution of genes in crop plants, farm animals, and agriculturally important insects and microorganisms. Agri Gene strives to be a diverse journal and topics in multiple fields will be considered for publication so long as their main focus is on agriculturally important organisms (plants, animals, insects, or microorganisms). Although not limited to the following, some examples of potential topics include: Gene discovery and characterization. Genetic markers to guide traditional breeding. Genetic effects of transposable elements. Evolutionary genetics, molecular evolution, population genetics, and phylogenetics. Profiling of gene expression and genetic variation. Biotechnology and crop or livestock improvement. Genetic improvement of biological control microorganisms. Genetic control of secondary metabolic pathways and metabolic enzymes of crop pathogens. Transcription analysis of beneficial or pest insect developmental stages Agri Gene encourages submission of novel manuscripts that present a reasonable level of analysis, functional relevance and/or mechanistic insight. Agri Gene also welcomes papers that have predominantly a descriptive component but improve the essential basis of knowledge for subsequent functional studies, or which provide important confirmation of recently published discoveries provided that the information is new.