地球生命联盟API:一个可扩展的开源服务,用于访问来自多个社区古数据资源的化石数据和分类

Q2 Agricultural and Biological Sciences
M. Uhen, Philip I. Buckland, S. Goring, J. Jenkins, John W. Williams
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引用次数: 5

摘要

对在广泛的空间和时间尺度上研究生物多样性动力学感兴趣的古生物学家和古生态学家建立了多个社区策划的数据资源,每个数据资源都强调特定的空间域、时间尺度或分类群。考虑到地球历史上生命的巨大多样性,这种数据资源的多样性是可以理解的,但这为实现对生命在时间上的多样性和分布的真正全球理解造成了障碍。在这里,我们介绍了地球生命联盟应用程序编程接口(ELC API),这是一种轻量级的数据服务,旨在从多种古生物资源中搜索和检索化石发生和分类信息。关键端点包括出现次数(返回选定分类群化石的时空位置)、位置(返回关于具有化石数据的地点的信息)、参考文献(返回书目信息)和分类法(返回与选定分类群相关的子地点的名称)。数据对象以JSON或CSV格式返回。ELC API利用Macrostrat和GPlates的服务,支持构造驱动的地理位置转变回到580 Ma。ELC API已首先用于古生物学数据库和Neotoma古生态学数据库,并对战略环境考古数据库进行了测试扩展。ELC API旨在易于扩展到其他古生物数据资源,所有端点都有完整的文档记录,并遵循开源标准(例如Swagger、OGC)。更广泛的目标是帮助建立一个由古生物和古环境数据资源组成的相互关联的联合生态系统,这些资源共同为古生物学家、宏观生态学家、生物地理学家和其他感兴趣的科学家提供了对生命随时间的多样性和分布的全面覆盖。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The EarthLife Consortium API: an extensible, open-source service for accessing fossil data and taxonomies from multiple community paleodata resources
Paleobiologists and paleoecologists interested in studying biodiversity dynamics over broad spatial and temporal scales have built multiple community-curated data resources, each emphasizing a particular spatial domain, timescale, or taxonomic group(s). This multiplicity of data resources is understandable, given the enormous diversity of life across Earth's history, but creates a barrier to achieving a truly global understanding of the diversity and distribution of life across time. Here we present the Earth Life Consortium Application Programming Interface (ELC API), a lightweight data service designed to search and retrieve fossil occurrence and taxonomic information from across multiple paleobiological resources. Key endpoints include Occurrences (returns spatiotemporal locations of fossils for selected taxa), Locales (returns information about sites with fossil data), References (returns bibliographic information), and Taxonomy (returns names of subtaxa associated with selected taxa). Data objects are returned as JSON or CSV format. The ELC API supports tectonic-driven shifts in geographic position back to 580 Ma using services from Macrostrat and GPlates. The ELC API has been implemented first for the Paleobiology Database and Neotoma Paleoecology Database, with a test extension to the Strategic Environmental Archaeology Database. The ELC API is designed to be readily extensible to other paleobiological data resources, with all endpoints fully documented and following open-source standards (e.g., Swagger, OGC). The broader goal is to help build an interlinked and federated ecosystem of paleobiological and paleoenvironmental data resources, which together provide paleobiologists, macroecologists, biogeographers, and other interested scientists with full coverage of the diversity and distribution of life across time.
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来源期刊
Frontiers of Biogeography
Frontiers of Biogeography Environmental Science-Ecology
CiteScore
4.30
自引率
0.00%
发文量
34
审稿时长
6 weeks
期刊介绍: Frontiers of Biogeography is the scientific magazine of the International Biogeography Society (http://www.biogeography.org/). Our scope includes news, original research letters, reviews, opinions and perspectives, news, commentaries, interviews, and articles on how to teach, disseminate and/or apply biogeographical knowledge. We accept papers on the study of the geographical variations of life at all levels of organization, including also studies on temporal and/or evolutionary variations in any component of biodiversity if they have a geographical perspective, as well as studies at relatively small scales if they have a spatially explicit component.
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